BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029675
         (293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containi...   125   4e-27
emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]   125   4e-27
gb|AAF79892.1|AC022472_1 Contains similarity to an unknown prote...   117   1e-24
ref|NP_173449.1| pentatricopeptide repeat-containing protein [Ar...   117   1e-24
ref|XP_002890375.1| pentatricopeptide repeat-containing protein ...   117   1e-24

>ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  125 bits (314), Expect = 4e-27
 Identities = 57/94 (60%), Positives = 77/94 (81%)
 Frame = -1

Query: 284 KMLSHGLLPDSYIFPSALKACAGLLDVRIGREVHGLACVTGFGFDSFVHSSLVHMYIKCG 105
           +ML+ GL+PD+ + PSA+KACAGL  ++  R+VHG+A V+GF  DSFV SSLVHMYIKC 
Sbjct: 104 QMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCN 163

Query: 104 EMIDARKLFDRMCDRNVVTWSAMVAGYARKGCVD 3
           ++ DA ++FDRM + +VV+WSA+VA YAR+GCVD
Sbjct: 164 QIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVD 197



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 31/86 (36%), Positives = 48/86 (55%)
 Frame = -1

Query: 269 GLLPDSYIFPSALKACAGLLDVRIGREVHGLACVTGFGFDSFVHSSLVHMYIKCGEMIDA 90
           G+ P+S   P  L AC  +  +  G+  H  +   G   D +V S+L+ MY KCG +  +
Sbjct: 381 GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQAS 440

Query: 89  RKLFDRMCDRNVVTWSAMVAGYARKG 12
           R  FD +  +N+V W+A++AGYA  G
Sbjct: 441 RICFDGIPTKNLVCWNAVIAGYAMHG 466


>emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  125 bits (314), Expect = 4e-27
 Identities = 57/94 (60%), Positives = 77/94 (81%)
 Frame = -1

Query: 284 KMLSHGLLPDSYIFPSALKACAGLLDVRIGREVHGLACVTGFGFDSFVHSSLVHMYIKCG 105
           +ML+ GL+PD+ + PSA+KACAGL  ++  R+VHG+A V+GF  DSFV SSLVHMYIKC 
Sbjct: 104 QMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCN 163

Query: 104 EMIDARKLFDRMCDRNVVTWSAMVAGYARKGCVD 3
           ++ DA ++FDRM + +VV+WSA+VA YAR+GCVD
Sbjct: 164 QIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVD 197



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 31/86 (36%), Positives = 48/86 (55%)
 Frame = -1

Query: 269 GLLPDSYIFPSALKACAGLLDVRIGREVHGLACVTGFGFDSFVHSSLVHMYIKCGEMIDA 90
           G+ P+S   P  L AC  +  +  G+  H  +   G   D +V S+L+ MY KCG +  +
Sbjct: 381 GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQAS 440

Query: 89  RKLFDRMCDRNVVTWSAMVAGYARKG 12
           R  FD +  +N+V W+A++AGYA  G
Sbjct: 441 RICFDGIPTKNLVCWNAVIAGYAMHG 466


>gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  117 bits (292), Expect = 1e-24
 Identities = 48/94 (51%), Positives = 72/94 (76%)
 Frame = -1

Query: 284 KMLSHGLLPDSYIFPSALKACAGLLDVRIGREVHGLACVTGFGFDSFVHSSLVHMYIKCG 105
           +M SHGL+PDS++ P+  K CA L   ++G+++H ++CV+G   D+FV  S+ HMY++CG
Sbjct: 106 RMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCG 165

Query: 104 EMIDARKLFDRMCDRNVVTWSAMVAGYARKGCVD 3
            M DARK+FDRM D++VVT SA++  YARKGC++
Sbjct: 166 RMGDARKVFDRMSDKDVVTCSALLCAYARKGCLE 199



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/86 (31%), Positives = 47/86 (54%)
 Frame = -1

Query: 269 GLLPDSYIFPSALKACAGLLDVRIGREVHGLACVTGFGFDSFVHSSLVHMYIKCGEMIDA 90
           G+ P+    PS L AC  +  +  GR  HG A       +  V S+L+ MY KCG +  +
Sbjct: 383 GVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLS 442

Query: 89  RKLFDRMCDRNVVTWSAMVAGYARKG 12
           + +F+ M  +N+V W++++ G++  G
Sbjct: 443 QIVFNMMPTKNLVCWNSLMNGFSMHG 468


>ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g20230 gi|332191832|gb|AEE29953.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  117 bits (292), Expect = 1e-24
 Identities = 48/94 (51%), Positives = 72/94 (76%)
 Frame = -1

Query: 284 KMLSHGLLPDSYIFPSALKACAGLLDVRIGREVHGLACVTGFGFDSFVHSSLVHMYIKCG 105
           +M SHGL+PDS++ P+  K CA L   ++G+++H ++CV+G   D+FV  S+ HMY++CG
Sbjct: 106 RMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCG 165

Query: 104 EMIDARKLFDRMCDRNVVTWSAMVAGYARKGCVD 3
            M DARK+FDRM D++VVT SA++  YARKGC++
Sbjct: 166 RMGDARKVFDRMSDKDVVTCSALLCAYARKGCLE 199



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/86 (31%), Positives = 47/86 (54%)
 Frame = -1

Query: 269 GLLPDSYIFPSALKACAGLLDVRIGREVHGLACVTGFGFDSFVHSSLVHMYIKCGEMIDA 90
           G+ P+    PS L AC  +  +  GR  HG A       +  V S+L+ MY KCG +  +
Sbjct: 383 GVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLS 442

Query: 89  RKLFDRMCDRNVVTWSAMVAGYARKG 12
           + +F+ M  +N+V W++++ G++  G
Sbjct: 443 QIVFNMMPTKNLVCWNSLMNGFSMHG 468


>ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336217|gb|EFH66634.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 760

 Score =  117 bits (292), Expect = 1e-24
 Identities = 49/94 (52%), Positives = 72/94 (76%)
 Frame = -1

Query: 284 KMLSHGLLPDSYIFPSALKACAGLLDVRIGREVHGLACVTGFGFDSFVHSSLVHMYIKCG 105
           +M SHGL+PD+++ P+  K CA L   + G+++H +ACV+G   D+FV  SL HMY++CG
Sbjct: 106 RMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCG 165

Query: 104 EMIDARKLFDRMCDRNVVTWSAMVAGYARKGCVD 3
            M DARK+FDRM +++VVT SA++ GYARKGC++
Sbjct: 166 RMGDARKVFDRMSEKDVVTCSALLCGYARKGCLE 199



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 29/86 (33%), Positives = 47/86 (54%)
 Frame = -1

Query: 269 GLLPDSYIFPSALKACAGLLDVRIGREVHGLACVTGFGFDSFVHSSLVHMYIKCGEMIDA 90
           G+ P+    PS L AC  +  +  GR  HG A       D  V S+L+ MY KCG +  +
Sbjct: 383 GVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMS 442

Query: 89  RKLFDRMCDRNVVTWSAMVAGYARKG 12
           + +F+ M  +N+V W++++ GY+  G
Sbjct: 443 QIVFNMMPTKNLVCWNSLMNGYSMHG 468