BLASTX nr result
ID: Coptis23_contig00029657
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00029657
(756 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containi... 290 3e-76
emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera] 285 7e-75
ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containi... 283 3e-74
emb|CBI22140.3| unnamed protein product [Vitis vinifera] 283 3e-74
ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containi... 267 2e-69
>ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
gi|296083555|emb|CBI23551.3| unnamed protein product
[Vitis vinifera]
Length = 580
Score = 290 bits (741), Expect = 3e-76
Identities = 142/207 (68%), Positives = 170/207 (82%)
Frame = -3
Query: 622 NALVSLYVKCAMALSCLLSMDSARKLFNEMPERSNVSWIAMISGYSRSGDVDLASELFDQ 443
NA++S YV+ +DSAR F+ MP+R+NVSW+ MISGYS+ GDVD A ELFDQ
Sbjct: 240 NAMISGYVEFG-------DIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQ 292
Query: 442 MGEKDLLLWNAMIACYAQNSRPKEALQLFNEMRKHNVNVQPDEMTFACAISACSQLGDLE 263
+G KDLLL+NAMIACYAQNSRPKEAL+LFN M +VNVQPDEMT A ISACSQLGDL
Sbjct: 293 VGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLR 352
Query: 262 FGLWIETYRSKIGVELDDHLATALVDLYAKCGNIEKAYELFHGLKKKDVVAYSALIFGCG 83
FG WIE+Y ++G+E+D HLATAL+DLYAKCG+I+KAYELFHGL+KKD+VAY+A+I GCG
Sbjct: 353 FGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCG 412
Query: 82 INGKAFEAIRLFREMTTAQIRPNSITY 2
INGKA +AI+LF EM AQI PNSIT+
Sbjct: 413 INGKAIDAIKLFDEMVDAQIFPNSITF 439
Score = 113 bits (283), Expect = 4e-23
Identities = 81/255 (31%), Positives = 136/255 (53%), Gaps = 7/255 (2%)
Frame = -3
Query: 748 PDTFTFSSVLSALALVVNDVRQCQQLHCGVVK---TGTETVVSVLNALVSLYVKCAMALS 578
P TF SS L A A + + +H V K +G + V ALV Y K
Sbjct: 103 PTTFALSSALKACARIAYRMGGLS-IHGQVQKFGFSGGGDGIYVETALVDFYCK------ 155
Query: 577 CLLSMDSARKLFNEMPERSNVSWIAMISGYSRSGDVDLASELFDQMGEKDLLLWNAMIAC 398
L M+ ARK+F+EM ER+ VSW +M++GY +SGD+ +A +FD++ +KD++ WN+MI+
Sbjct: 156 -LGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISG 214
Query: 397 YAQNSRPKEALQLFNEMRKHNVNVQPDEMTFACAISACSQLGDLEFGLWIETYRSKIGV- 221
YA+ ++AL LF +M + N ++ IS + GD I++ RS
Sbjct: 215 YARAGDMEKALSLFQQMPERNF------ASWNAMISGYVEFGD------IDSARSFFDAM 262
Query: 220 -ELDDHLATALVDLYAKCGNIEKAYELFHGLKKKDVVAYSALIFGCGINGKAFEAIRLFR 44
+ ++ ++ Y+KCG+++ A ELF + KD++ ++A+I N + EA++LF
Sbjct: 263 PQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFN 322
Query: 43 EMTT--AQIRPNSIT 5
M ++P+ +T
Sbjct: 323 NMLNPDVNVQPDEMT 337
>emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
Length = 841
Score = 285 bits (729), Expect = 7e-75
Identities = 140/207 (67%), Positives = 168/207 (81%)
Frame = -3
Query: 622 NALVSLYVKCAMALSCLLSMDSARKLFNEMPERSNVSWIAMISGYSRSGDVDLASELFDQ 443
NA++S YV+ +DSAR F+ MP+ +NVSW+ MISGYS+ GDVD A ELFDQ
Sbjct: 236 NAMISGYVEFG-------DIDSARSFFDAMPQXNNVSWMTMISGYSKCGDVDSACELFDQ 288
Query: 442 MGEKDLLLWNAMIACYAQNSRPKEALQLFNEMRKHNVNVQPDEMTFACAISACSQLGDLE 263
+G KDLLL+NAMIACYAQNSRPKEAL+LFN M +VNVQPDEMT A ISACSQLGDL
Sbjct: 289 VGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLR 348
Query: 262 FGLWIETYRSKIGVELDDHLATALVDLYAKCGNIEKAYELFHGLKKKDVVAYSALIFGCG 83
FG WIE+Y ++G+E+D HLATAL+DLYAKCG+I+KAYELFHGL+KKD+VAY+A+I GCG
Sbjct: 349 FGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCG 408
Query: 82 INGKAFEAIRLFREMTTAQIRPNSITY 2
INGKA +AI+LF EM AQI PN IT+
Sbjct: 409 INGKAIDAIKLFDEMVDAQIFPNLITF 435
Score = 114 bits (284), Expect = 3e-23
Identities = 81/255 (31%), Positives = 136/255 (53%), Gaps = 7/255 (2%)
Frame = -3
Query: 748 PDTFTFSSVLSALALVVNDVRQCQQLHCGVVK---TGTETVVSVLNALVSLYVKCAMALS 578
P TF SS L A A + + +H V K +G + V ALV Y K
Sbjct: 99 PTTFALSSALKACARIAYRMGGLS-IHGQVQKFGFSGGGDGIYVETALVDFYCK------ 151
Query: 577 CLLSMDSARKLFNEMPERSNVSWIAMISGYSRSGDVDLASELFDQMGEKDLLLWNAMIAC 398
L M+ ARK+F+EM ER+ VSW +M++GY +SGD+ +A +FD++ +KD++ WN+MI+
Sbjct: 152 -LGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISG 210
Query: 397 YAQNSRPKEALQLFNEMRKHNVNVQPDEMTFACAISACSQLGDLEFGLWIETYRSKIGV- 221
YA+ ++AL LF +M + N ++ IS + GD I++ RS
Sbjct: 211 YARAGDMEKALSLFQQMPERNF------ASWNAMISGYVEFGD------IDSARSFFDAM 258
Query: 220 -ELDDHLATALVDLYAKCGNIEKAYELFHGLKKKDVVAYSALIFGCGINGKAFEAIRLFR 44
+ ++ ++ Y+KCG+++ A ELF + KD++ ++A+I N + EA++LF
Sbjct: 259 PQXNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFN 318
Query: 43 EMTT--AQIRPNSIT 5
M ++P+ +T
Sbjct: 319 NMLNPDVNVQPDEMT 333
>ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
Length = 580
Score = 283 bits (724), Expect = 3e-74
Identities = 139/207 (67%), Positives = 167/207 (80%)
Frame = -3
Query: 622 NALVSLYVKCAMALSCLLSMDSARKLFNEMPERSNVSWIAMISGYSRSGDVDLASELFDQ 443
NA++S +V+ +DSAR F+ MP+++NVSW+ MISGYS+ GDVD A ELFDQ
Sbjct: 240 NAMISGHVEFG-------DIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQ 292
Query: 442 MGEKDLLLWNAMIACYAQNSRPKEALQLFNEMRKHNVNVQPDEMTFACAISACSQLGDLE 263
+G KDLLL+NAMIACYAQNSRP EAL LFN M VNVQPDEMT A ISACSQLGDL
Sbjct: 293 VGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLR 352
Query: 262 FGLWIETYRSKIGVELDDHLATALVDLYAKCGNIEKAYELFHGLKKKDVVAYSALIFGCG 83
FG WIE+Y ++G+E+D HLATAL+DLYAKCG+I+KAYELFHGL+KKD+VAY+A+I GCG
Sbjct: 353 FGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCG 412
Query: 82 INGKAFEAIRLFREMTTAQIRPNSITY 2
INGKA +AI+LF EM AQI PNSIT+
Sbjct: 413 INGKAIDAIKLFDEMVDAQIFPNSITF 439
Score = 110 bits (275), Expect = 3e-22
Identities = 79/254 (31%), Positives = 131/254 (51%), Gaps = 6/254 (2%)
Frame = -3
Query: 748 PDTFTFSSVLSALALVVNDVRQCQQLHCGVVKTGTETV---VSVLNALVSLYVKCAMALS 578
P TF SS L A A + + +H V K G + V ALV Y K
Sbjct: 103 PTTFALSSALKACARIAYRMGGIS-IHGQVQKFGFSCGGDGIYVETALVDFYCK------ 155
Query: 577 CLLSMDSARKLFNEMPERSNVSWIAMISGYSRSGDVDLASELFDQMGEKDLLLWNAMIAC 398
L M+ ARK+F+EM ER+ VSW +M++GY +SGD+ +A +FD++ +KD++ WN+MI+
Sbjct: 156 -LGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISG 214
Query: 397 YAQNSRPKEALQLFNEMRKHNVNVQPDEMTFACAISACSQLGDLEFG-LWIETYRSKIGV 221
YA+ ++A LF +M + N ++ IS + GD++ + + K V
Sbjct: 215 YARAGDMEKASSLFQQMPERNF------ASWNAMISGHVEFGDIDSARSFFDAMPQKNNV 268
Query: 220 ELDDHLATALVDLYAKCGNIEKAYELFHGLKKKDVVAYSALIFGCGINGKAFEAIRLFRE 41
++ Y+KCG+++ A ELF + KD++ ++A+I N + EA+ LF
Sbjct: 269 SW-----MTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNN 323
Query: 40 MTT--AQIRPNSIT 5
M ++P+ +T
Sbjct: 324 MLNPYVNVQPDEMT 337
>emb|CBI22140.3| unnamed protein product [Vitis vinifera]
Length = 428
Score = 283 bits (724), Expect = 3e-74
Identities = 139/207 (67%), Positives = 167/207 (80%)
Frame = -3
Query: 622 NALVSLYVKCAMALSCLLSMDSARKLFNEMPERSNVSWIAMISGYSRSGDVDLASELFDQ 443
NA++S +V+ +DSAR F+ MP+++NVSW+ MISGYS+ GDVD A ELFDQ
Sbjct: 88 NAMISGHVEFG-------DIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQ 140
Query: 442 MGEKDLLLWNAMIACYAQNSRPKEALQLFNEMRKHNVNVQPDEMTFACAISACSQLGDLE 263
+G KDLLL+NAMIACYAQNSRP EAL LFN M VNVQPDEMT A ISACSQLGDL
Sbjct: 141 VGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLR 200
Query: 262 FGLWIETYRSKIGVELDDHLATALVDLYAKCGNIEKAYELFHGLKKKDVVAYSALIFGCG 83
FG WIE+Y ++G+E+D HLATAL+DLYAKCG+I+KAYELFHGL+KKD+VAY+A+I GCG
Sbjct: 201 FGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCG 260
Query: 82 INGKAFEAIRLFREMTTAQIRPNSITY 2
INGKA +AI+LF EM AQI PNSIT+
Sbjct: 261 INGKAIDAIKLFDEMVDAQIFPNSITF 287
Score = 89.7 bits (221), Expect = 6e-16
Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 3/213 (1%)
Frame = -3
Query: 634 VSVLNALVSLYVKCAMALSCLLSMDSARKLFNEMPERSNVSWIAMISGYSRSGDVDLASE 455
+ V ALV Y K L M+ ARK+F+EM ER+ VSW +M++GY ++GD++ AS
Sbjct: 22 IYVETALVDFYCK-------LGDMEIARKMFDEMAERNVVSWNSMLAGYLKAGDMEKASS 74
Query: 454 LFDQMGEKDLLLWNAMIACYAQNSRPKEALQLFNEM-RKHNVNVQPDEMTFACAISACSQ 278
LF QM E++ WNAMI+ + + A F+ M +K+NV+
Sbjct: 75 LFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVS----------------- 117
Query: 277 LGDLEFGLWIETYRSKIGVELDDHLATALVDLYAKCGNIEKAYELFHGLKKKDVVAYSAL 98
W+ ++ Y+KCG+++ A ELF + KD++ ++A+
Sbjct: 118 --------WM-----------------TMISGYSKCGDVDSACELFDQVGGKDLLLFNAM 152
Query: 97 IFGCGINGKAFEAIRLFREMTT--AQIRPNSIT 5
I N + EA+ LF M ++P+ +T
Sbjct: 153 IACYAQNSRPNEALNLFNNMLNPYVNVQPDEMT 185
>ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Glycine max]
Length = 576
Score = 267 bits (683), Expect = 2e-69
Identities = 137/248 (55%), Positives = 180/248 (72%)
Frame = -3
Query: 745 DTFTFSSVLSALALVVNDVRQCQQLHCGVVKTGTETVVSVLNALVSLYVKCAMALSCLLS 566
D +++S++S A N V Q C + + E +S NA+++ ++ C S
Sbjct: 200 DVISWNSMISGYAKAGN-VGQA----CTLFQRMPERNLSSWNAMIAGFIDCG-------S 247
Query: 565 MDSARKLFNEMPERSNVSWIAMISGYSRSGDVDLASELFDQMGEKDLLLWNAMIACYAQN 386
+ SAR+ F+ MP R+ VSWI MI+GYS+ GDVD A +LFDQM KDLL +NAMIACYAQN
Sbjct: 248 LVSAREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKLFDQMDHKDLLSYNAMIACYAQN 307
Query: 385 SRPKEALQLFNEMRKHNVNVQPDEMTFACAISACSQLGDLEFGLWIETYRSKIGVELDDH 206
S+PKEAL+LFN+M K ++ V PD+MT A ISACSQLGDLE WIE++ + G+ LDDH
Sbjct: 308 SKPKEALELFNDMLKQDIYVHPDKMTLASVISACSQLGDLEHWWWIESHMNDFGIVLDDH 367
Query: 205 LATALVDLYAKCGNIEKAYELFHGLKKKDVVAYSALIFGCGINGKAFEAIRLFREMTTAQ 26
LATAL+DLYAKCG+I+KAYELFH L+K+D+VAYSA+I+GCGINGKA +AI+LF +M
Sbjct: 368 LATALIDLYAKCGSIDKAYELFHNLRKRDLVAYSAMIYGCGINGKASDAIKLFEQMLAEC 427
Query: 25 IRPNSITY 2
I PN +TY
Sbjct: 428 IGPNLVTY 435
Score = 100 bits (248), Expect = 4e-19
Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 2/250 (0%)
Frame = -3
Query: 748 PDTFTFSSVLSALALVVNDVRQCQQLHCGVVKTGTETVVSVLNALVSLYVKCAMALSCLL 569
P + SS L + A + +D+ +H V G T V V AL+ LY K
Sbjct: 102 PTSHAVSSALKSCARI-HDMLCGMSIHGQVHVFGFNTCVYVQTALLDLYSKIG------- 153
Query: 568 SMDSARKLFNEMPERSNVSWIAMISGYSRSGDVDLASELFDQMGEKDLLLWNAMIACYAQ 389
M +ARK+F+EM +S VSW +++SGY ++G++D A LF ++ KD++ WN+MI+ YA+
Sbjct: 154 DMGTARKVFDEMANKSVVSWNSLLSGYVKAGNLDEAQYLFSEIPGKDVISWNSMISGYAK 213
Query: 388 NSRPKEALQLFNEMRKHNVNVQPDEMTFACAISACSQLGDLEFGLWIETYRSKIGVELDD 209
+A LF M + N++ A I S + EF +T + V
Sbjct: 214 AGNVGQACTLFQRMPERNLSSW--NAMIAGFIDCGSLVSAREF---FDTMPRRNCVSW-- 266
Query: 208 HLATALVDLYAKCGNIEKAYELFHGLKKKDVVAYSALIFGCGINGKAFEAIRLFREMTTA 29
++ Y+K G+++ A +LF + KD+++Y+A+I N K EA+ LF +M
Sbjct: 267 ---ITMIAGYSKGGDVDSARKLFDQMDHKDLLSYNAMIACYAQNSKPKEALELFNDMLKQ 323
Query: 28 QI--RPNSIT 5
I P+ +T
Sbjct: 324 DIYVHPDKMT 333
Score = 59.7 bits (143), Expect = 6e-07
Identities = 37/131 (28%), Positives = 68/131 (51%)
Frame = -3
Query: 430 DLLLWNAMIACYAQNSRPKEALQLFNEMRKHNVNVQPDEMTFACAISACSQLGDLEFGLW 251
D W +I ++Q EA+ L+ +M H ++ P + A+ +C+++ D+ G+
Sbjct: 68 DSFSWGCVIRFFSQKCLFTEAVSLYVQM--HRTSLCPTSHAVSSALKSCARIHDMLCGMS 125
Query: 250 IETYRSKIGVELDDHLATALVDLYAKCGNIEKAYELFHGLKKKDVVAYSALIFGCGINGK 71
I G ++ TAL+DLY+K G++ A ++F + K VV++++L+ G G
Sbjct: 126 IHGQVHVFGFNTCVYVQTALLDLYSKIGDMGTARKVFDEMANKSVVSWNSLLSGYVKAGN 185
Query: 70 AFEAIRLFREM 38
EA LF E+
Sbjct: 186 LDEAQYLFSEI 196
Score = 57.8 bits (138), Expect = 2e-06
Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Frame = -3
Query: 505 AMISGYSRSGDVDLASELFDQMGEKDLLLWNAMIACYAQNSRPKEALQLFNEMRKHNVNV 326
A+I Y++ G +D A ELF + ++DL+ ++AMI N + +A++LF +M +
Sbjct: 371 ALIDLYAKCGSIDKAYELFHNLRKRDLVAYSAMIYGCGINGKASDAIKLFEQMLAECIG- 429
Query: 325 QPDEMTFACAISACSQLGDLEFGLWIETYRSKIG-VELDDHLATALVDLYAKCGNIEKAY 149
P+ +T+ ++A + G +E G G V DH +VDL+ + G +++AY
Sbjct: 430 -PNLVTYTGLLTAYNHAGLVEKGYQCFNSMKDYGLVPSIDHYGI-MVDLFGRAGYLDEAY 487
Query: 148 ELFHGL-KKKDVVAYSALIFGCGIN 77
+L + + + + AL+ C ++
Sbjct: 488 KLILNMPMQPNAGVWGALLLACRLH 512