BLASTX nr result
ID: Coptis23_contig00029595
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00029595
(937 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 152 8e-86
ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containi... 151 2e-85
ref|XP_002885623.1| pentatricopeptide repeat-containing protein ... 144 5e-85
ref|XP_002308737.1| predicted protein [Populus trichocarpa] gi|2... 140 2e-84
ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containi... 145 3e-81
>ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 152 bits (385), Expect(3) = 8e-86
Identities = 73/118 (61%), Positives = 94/118 (79%), Gaps = 1/118 (0%)
Frame = +1
Query: 406 DRAQSFIKAMPIETNAAVWGALLSACRILENVELGIIAAERVFELDPHDSDLPVLLANMY 585
+ A FI+ MPI+ AAVWGALL ACR+ +N++LG+ AAE++FELDPHDS VLL+N+Y
Sbjct: 459 NEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIY 518
Query: 586 ASAGQWSDAAEARQMMKDIKLKKEPACSWMEVANAVHMLVAN-DQHPQIEEIRGMWEK 756
ASAG+ SDAA+ R+MMK+ +KKEPACSW+E+ N VH+ VAN D HP EEI+ MWEK
Sbjct: 519 ASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEK 576
Score = 115 bits (288), Expect(3) = 8e-86
Identities = 59/117 (50%), Positives = 77/117 (65%), Gaps = 3/117 (2%)
Frame = +2
Query: 47 KKGKWAHAHMTKAGLMLIAFVGNTLVDMYSKAGSFKDAKKIFDRLEKKDVVSWNSILGVP 226
++GKW HAH+ K+G IA++GNTL+DMY+K+GS KDAKK+F RL K+D+VSWNSI+
Sbjct: 323 EQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGY 382
Query: 227 TTDXXXXXXXXXXXXX---GFKRNVVTFLCVFTV*SHGGLLNEGQYYFELMKK*EID 388
+ N +TFL V T SH GLL+EGQYYFELMKK +I+
Sbjct: 383 AQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIE 439
Score = 97.8 bits (242), Expect(3) = 8e-86
Identities = 45/58 (77%), Positives = 53/58 (91%)
Frame = +2
Query: 764 KIKEVGYVPDTSHVLLFVDQQEKEVKLQYHSEKLALAFALLNTSPGSTIHIKKNIRMC 937
KIKE+GYVPDTSHVL F++QQ++E+KLQYHSEKLALAFA+L T PG TI IKKNIR+C
Sbjct: 580 KIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRIC 637
>ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 151 bits (382), Expect(3) = 2e-85
Identities = 72/118 (61%), Positives = 94/118 (79%), Gaps = 1/118 (0%)
Frame = +1
Query: 406 DRAQSFIKAMPIETNAAVWGALLSACRILENVELGIIAAERVFELDPHDSDLPVLLANMY 585
+ A FI+ MPI+ AAVWGALL +CR+ +N++LG+ AAE++FELDPHDS VLL+N+Y
Sbjct: 460 NEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIY 519
Query: 586 ASAGQWSDAAEARQMMKDIKLKKEPACSWMEVANAVHMLVAN-DQHPQIEEIRGMWEK 756
ASAG+ SDAA+ R+MMK+ +KKEPACSW+E+ N VH+ VAN D HP EEI+ MWEK
Sbjct: 520 ASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEK 577
Score = 115 bits (288), Expect(3) = 2e-85
Identities = 59/117 (50%), Positives = 77/117 (65%), Gaps = 3/117 (2%)
Frame = +2
Query: 47 KKGKWAHAHMTKAGLMLIAFVGNTLVDMYSKAGSFKDAKKIFDRLEKKDVVSWNSILGVP 226
++GKW HAH+ K+G IA++GNTL+DMY+K+GS KDAKK+F RL K+D+VSWNSI+
Sbjct: 324 EQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGY 383
Query: 227 TTDXXXXXXXXXXXXX---GFKRNVVTFLCVFTV*SHGGLLNEGQYYFELMKK*EID 388
+ N +TFL V T SH GLL+EGQYYFELMKK +I+
Sbjct: 384 AQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIE 440
Score = 97.8 bits (242), Expect(3) = 2e-85
Identities = 45/58 (77%), Positives = 53/58 (91%)
Frame = +2
Query: 764 KIKEVGYVPDTSHVLLFVDQQEKEVKLQYHSEKLALAFALLNTSPGSTIHIKKNIRMC 937
KIKE+GYVPDTSHVL F++QQ++E+KLQYHSEKLALAFA+L T PG TI IKKNIR+C
Sbjct: 581 KIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRIC 638
>ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297331463|gb|EFH61882.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 624
Score = 144 bits (364), Expect(3) = 5e-85
Identities = 70/118 (59%), Positives = 88/118 (74%), Gaps = 1/118 (0%)
Frame = +1
Query: 406 DRAQSFIKAMPIETNAAVWGALLSACRILENVELGIIAAERVFELDPHDSDLPVLLANMY 585
+RA FI+ MPIE AA+W ALL+ACR+ +N ELG AAE VFELDP D V+L N+Y
Sbjct: 406 NRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIY 465
Query: 586 ASAGQWSDAAEARQMMKDIKLKKEPACSWMEVANAVHMLVANDQ-HPQIEEIRGMWEK 756
AS G+W+DAA R+ MK+ +KKEPACSW+E+ NA+HM VAND+ HPQ EEI WE+
Sbjct: 466 ASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEE 523
Score = 113 bits (282), Expect(3) = 5e-85
Identities = 57/113 (50%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Frame = +2
Query: 47 KKGKWAHAHMTKAGLMLIAFVGNTLVDMYSKAGSFKDAKKIFDRLEKKDVVSWNSILGVP 226
++GKW HA+M K+G L+AF GNTL+DMY+K+GS DA+KIFDRL K+DVVSWNS+L
Sbjct: 270 EQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAY 329
Query: 227 TT---DXXXXXXXXXXXXXGFKRNVVTFLCVFTV*SHGGLLNEGQYYFELMKK 376
G + N ++FL V T SH GLL+EG +Y+ELMKK
Sbjct: 330 AQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKK 382
Score = 105 bits (262), Expect(3) = 5e-85
Identities = 49/58 (84%), Positives = 55/58 (94%)
Frame = +2
Query: 764 KIKEVGYVPDTSHVLLFVDQQEKEVKLQYHSEKLALAFALLNTSPGSTIHIKKNIRMC 937
KIKE+GYVPDTSHV++ VDQQE+EV LQYHSEK+ALAFALLNT PGSTIHIKKNIR+C
Sbjct: 527 KIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVC 584
>ref|XP_002308737.1| predicted protein [Populus trichocarpa] gi|222854713|gb|EEE92260.1|
predicted protein [Populus trichocarpa]
Length = 590
Score = 140 bits (354), Expect(3) = 2e-84
Identities = 70/118 (59%), Positives = 87/118 (73%), Gaps = 1/118 (0%)
Frame = +1
Query: 406 DRAQSFIKAMPIETNAAVWGALLSACRILENVELGIIAAERVFELDPHDSDLPVLLANMY 585
DRA FI MPI+ AAVWGALL ACR+ +N+ELG AAE +FELD H VLL N+Y
Sbjct: 372 DRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIY 431
Query: 586 ASAGQWSDAAEARQMMKDIKLKKEPACSWMEVANAVHMLVANDQ-HPQIEEIRGMWEK 756
A AG+W+DAA+ R+MMK+ +KKEPACSW+E+ N VH+ VA+D HPQ EI MWE+
Sbjct: 432 ALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQ 489
Score = 117 bits (292), Expect(3) = 2e-84
Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 3/119 (2%)
Frame = +2
Query: 47 KKGKWAHAHMTKAGLMLIAFVGNTLVDMYSKAGSFKDAKKIFDRLEKKDVVSWNSILGVP 226
++GKW HA M K G L+AFVGNTL+DMY+K+GS +DAKK+FDRL K+DVVSWNS+L
Sbjct: 236 EQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGY 295
Query: 227 TTDXXXXXXXXXXXXXGFKR---NVVTFLCVFTV*SHGGLLNEGQYYFELMKK*EIDPR 394
+ R N +TFLCV T SH GLL+EG++YF++MKK ++P+
Sbjct: 296 SQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQ 354
Score = 103 bits (256), Expect(3) = 2e-84
Identities = 49/58 (84%), Positives = 54/58 (93%)
Frame = +2
Query: 764 KIKEVGYVPDTSHVLLFVDQQEKEVKLQYHSEKLALAFALLNTSPGSTIHIKKNIRMC 937
KIKE+GYVPD+SHVLL +DQQE+E KLQYHSEKLALAFALLNT PGSTI IKKNIR+C
Sbjct: 493 KIKEIGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRIC 550
>ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 145 bits (365), Expect(3) = 3e-81
Identities = 70/118 (59%), Positives = 89/118 (75%), Gaps = 1/118 (0%)
Frame = +1
Query: 406 DRAQSFIKAMPIETNAAVWGALLSACRILENVELGIIAAERVFELDPHDSDLPVLLANMY 585
D+A+SFI+ MPIE A+WGALL A ++ +N E+G AA+RVFELDP LLAN+Y
Sbjct: 429 DQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIY 488
Query: 586 ASAGQWSDAAEARQMMKDIKLKKEPACSWMEVANAVHMLVAND-QHPQIEEIRGMWEK 756
ASAG+W D A+ R++MKD +KKEPACSW+EV N+VH+ VAND HPQ E+I MWEK
Sbjct: 489 ASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEK 546
Score = 105 bits (262), Expect(3) = 3e-81
Identities = 50/59 (84%), Positives = 55/59 (93%)
Frame = +2
Query: 761 KKIKEVGYVPDTSHVLLFVDQQEKEVKLQYHSEKLALAFALLNTSPGSTIHIKKNIRMC 937
+KIKE+GYVPDTSHVLLFVDQQEKE+ LQYHSEKLAL+FALLNT PGSTI I KNIR+C
Sbjct: 549 QKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVC 607
Score = 100 bits (248), Expect(3) = 3e-81
Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
Frame = +2
Query: 47 KKGKWAHAHMTKAGLMLIAFVGNTLVDMYSKAGSFKDAKKIFDRLEKKDVVSWNSIL--- 217
++GKW HAH+ K+ L+ +VGNTL+ MY+K+GS +DA+K+FD+L K DVVS NS+L
Sbjct: 293 EQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGY 352
Query: 218 GVPTTDXXXXXXXXXXXXXGFKRNVVTFLCVFTV*SHGGLLNEGQYYFELMKK*EIDPR 394
G + N +TFL V T SH LL+EG++YF LM+K I+P+
Sbjct: 353 AQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPK 411