BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029586
         (816 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002461653.1| hypothetical protein SORBIDRAFT_02g005970 [S...    66   8e-09
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...    63   7e-08
gb|ABF97084.1| retrotransposon protein, putative, unclassified [...    62   2e-07
gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza ...    62   2e-07
gb|AAX95129.1| retrotransposon protein, putative, unclassified [...    62   2e-07

>ref|XP_002461653.1| hypothetical protein SORBIDRAFT_02g005970 [Sorghum bicolor]
           gi|241925030|gb|EER98174.1| hypothetical protein
           SORBIDRAFT_02g005970 [Sorghum bicolor]
          Length = 172

 Score = 66.2 bits (160), Expect = 8e-09
 Identities = 31/63 (49%), Positives = 45/63 (71%)
 Frame = +1

Query: 628 GKKIPVVVGFSGNCNCMNSSFNETFLALIPKVSNPDHMSKFRPISLCNFCYKIIAKILAN 807
           G  + V V  + N   + S +N+T + +IPKV NPD +++FRPISLCN  YK+I+K+LAN
Sbjct: 45  GDDLVVQVLGAVNSATIPSGWNDTMIVMIPKVENPDKVAQFRPISLCNVVYKVISKMLAN 104

Query: 808 RLK 816
           R+K
Sbjct: 105 RMK 107


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score = 63.2 bits (152), Expect = 7e-08
 Identities = 26/45 (57%), Positives = 37/45 (82%)
 Frame = +1

Query: 682 SSFNETFLALIPKVSNPDHMSKFRPISLCNFCYKIIAKILANRLK 816
           + FN + +ALIPKV NP  ++++RPISLCN  YK+++K+LANRLK
Sbjct: 770 ADFNHSLIALIPKVQNPKKVTEYRPISLCNVVYKLVSKVLANRLK 814


>gb|ABF97084.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1184

 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 27/43 (62%), Positives = 36/43 (83%)
 Frame = +1

Query: 688 FNETFLALIPKVSNPDHMSKFRPISLCNFCYKIIAKILANRLK 816
           +N+T + +IPKV  PD +++FRPISLCN  YKII+K+LANRLK
Sbjct: 347 WNDTTVVMIPKVDKPDRVTQFRPISLCNVVYKIISKMLANRLK 389


>gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1185

 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 27/43 (62%), Positives = 36/43 (83%)
 Frame = +1

Query: 688 FNETFLALIPKVSNPDHMSKFRPISLCNFCYKIIAKILANRLK 816
           +N+T + +IPKV  PD +++FRPISLCN  YKII+K+LANRLK
Sbjct: 347 WNDTTVVMIPKVDKPDRVTQFRPISLCNVVYKIISKMLANRLK 389


>gb|AAX95129.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|62733115|gb|AAX95232.1|
            retrotransposon protein, putative, unclassified [Oryza
            sativa Japonica Group]
          Length = 1324

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 28/47 (59%), Positives = 35/47 (74%)
 Frame = +1

Query: 676  MNSSFNETFLALIPKVSNPDHMSKFRPISLCNFCYKIIAKILANRLK 816
            M  S+N+T + LIPKV NP+ +   RPISLCN  YKI +K+LANRLK
Sbjct: 937  MPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYKIASKVLANRLK 983