BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029490
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...    63   3e-08
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    63   3e-08
emb|CBI40152.3| unnamed protein product [Vitis vinifera]               57   2e-06
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...    57   2e-06
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...    55   8e-06

>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
           sativus]
          Length = 1959

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 32/55 (58%), Positives = 39/55 (70%)
 Frame = +3

Query: 159 MEAPVDNFLPKLSGLRNSIDSKSESCINKVVQWIGFLGIPLAD*GKFTRKNFIED 323
           ++ P  NF+ KLS L    DSKSES INKVVQ IGFLG+ L+D G+F  K+ IED
Sbjct: 667 VKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIED 721


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E
           subunit 1-like [Cucumis sativus]
          Length = 2019

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 32/55 (58%), Positives = 39/55 (70%)
 Frame = +3

Query: 159 MEAPVDNFLPKLSGLRNSIDSKSESCINKVVQWIGFLGIPLAD*GKFTRKNFIED 323
           ++ P  NF+ KLS L    DSKSES INKVVQ IGFLG+ L+D G+F  K+ IED
Sbjct: 697 VKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIED 751


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 30/55 (54%), Positives = 37/55 (67%)
 Frame = +3

Query: 156 LMEAPVDNFLPKLSGLRNSIDSKSESCINKVVQWIGFLGIPLAD*GKFTRKNFIE 320
           L + PV NF+   S L N IDSKS+S INKVVQ IGFLG  L++ GKF  +  +E
Sbjct: 726 LTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVE 780


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 30/55 (54%), Positives = 37/55 (67%)
 Frame = +3

Query: 156 LMEAPVDNFLPKLSGLRNSIDSKSESCINKVVQWIGFLGIPLAD*GKFTRKNFIE 320
           L + PV NF+   S L N IDSKS+S INKVVQ IGFLG  L++ GKF  +  +E
Sbjct: 666 LTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVE 720


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/52 (50%), Positives = 37/52 (71%)
 Frame = +3

Query: 168 PVDNFLPKLSGLRNSIDSKSESCINKVVQWIGFLGIPLAD*GKFTRKNFIED 323
           PV +F+ +LS + + ID KS+S + KVVQ IGFLG+ ++D GKF  K  +ED
Sbjct: 673 PVADFIVRLSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYTKTLVED 724