BLASTX nr result

ID: Coptis23_contig00029482 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029482
         (690 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002312727.1| predicted protein [Populus trichocarpa] gi|2...    81   2e-13
emb|CBI26160.3| unnamed protein product [Vitis vinifera]               79   7e-13
ref|XP_002279111.1| PREDICTED: uncharacterized protein LOC100244...    79   1e-12
ref|XP_003546117.1| PREDICTED: uncharacterized protein LOC100778...    69   7e-10
ref|XP_003541642.1| PREDICTED: uncharacterized protein LOC100817...    69   9e-10

>ref|XP_002312727.1| predicted protein [Populus trichocarpa] gi|222852547|gb|EEE90094.1|
           predicted protein [Populus trichocarpa]
          Length = 409

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 59/154 (38%), Positives = 78/154 (50%)
 Frame = +1

Query: 229 VMREVYEKVVPSLVDREVFWERYFYRVFKLKQVEDARESLVKRAISGXXXXXXXXXXXXX 408
           V+ ++Y KVVPS VD + FW RYFYR+FKLKQ E+AR  LVKRAISG             
Sbjct: 221 VVNQIYYKVVPSKVDDQSFWSRYFYRLFKLKQAEEARALLVKRAISG------------- 267

Query: 409 XSNNGYXXXXXXXXXXXXXXXXXXXIRDGGNQACLSQSVYNEKVVEGEEKASPSEDG*AL 588
                                      DGG  +  S    N+ +   EEK     +G + 
Sbjct: 268 DEEEDLSWDFDDDDDDMRRRREIEEREDGGLPSLRSP---NKSMDTLEEKGG---NGGSC 321

Query: 589 KSSELPVVSLVSKEEEDEDLGWDEIEDIEGNHDE 690
           K S++ +VS  S+  ++EDLGWDEIE I G++DE
Sbjct: 322 KDSDVSIVS--SQSLQEEDLGWDEIEFI-GSNDE 352


>emb|CBI26160.3| unnamed protein product [Vitis vinifera]
          Length = 353

 Score = 79.3 bits (194), Expect = 7e-13
 Identities = 53/154 (34%), Positives = 73/154 (47%)
 Frame = +1

Query: 229 VMREVYEKVVPSLVDREVFWERYFYRVFKLKQVEDARESLVKRAISGXXXXXXXXXXXXX 408
           VM E+Y KVVP++VD + FW RYFYR+ KLK VEDAR +LV RAI+G             
Sbjct: 188 VMGEIYSKVVPNVVDHDTFWSRYFYRIHKLKLVEDARVNLVNRAIAGDEEEDLSWDIDDD 247

Query: 409 XSNNGYXXXXXXXXXXXXXXXXXXXIRDGGNQACLSQSVYNEKVVEGEEKASPSEDG*AL 588
             +                        DG + +  S++   + + EG             
Sbjct: 248 EDDE---------------EKSNGVNSDGRSDSDKSETKSEKMISEG------------- 279

Query: 589 KSSELPVVSLVSKEEEDEDLGWDEIEDIEGNHDE 690
           ++  + +VS      E+EDLGWDEIEDI G+ DE
Sbjct: 280 RTDSVSIVSSPPSLPEEEDLGWDEIEDI-GSIDE 312


>ref|XP_002279111.1| PREDICTED: uncharacterized protein LOC100244278 [Vitis vinifera]
          Length = 426

 Score = 78.6 bits (192), Expect = 1e-12
 Identities = 58/170 (34%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
 Frame = +1

Query: 229 VMREVYEKVVPSLVDREVFWERYFYRVFKLKQVEDARESLVKRAISG-----XXXXXXXX 393
           VM E+Y KVVP++VD + FW RYFYR+ KLK VEDAR +LV RAI+G             
Sbjct: 217 VMGEIYSKVVPNVVDHDTFWSRYFYRIHKLKLVEDARVNLVNRAIAGDEEEDLSWDIDDD 276

Query: 394 XXXXXXSNNGYXXXXXXXXXXXXXXXXXXXIRDGGNQACLSQSVYNEKV------VEGEE 555
                 SN                      + +   +  L + V +E+        +G  
Sbjct: 277 EDDEEKSNGSELKRELNKENSSESVMEQKFVENSQLEESLKKGVVHEQAPDERVNSDGRS 336

Query: 556 KASPSEDG*ALKSSE-----LPVVSLVSKEEEDEDLGWDEIEDIEGNHDE 690
            +  SE       SE     + +VS      E+EDLGWDEIEDI G+ DE
Sbjct: 337 DSDKSETKSEKMISEGRTDSVSIVSSPPSLPEEEDLGWDEIEDI-GSIDE 385


>ref|XP_003546117.1| PREDICTED: uncharacterized protein LOC100778735 [Glycine max]
          Length = 449

 Score = 69.3 bits (168), Expect = 7e-10
 Identities = 32/47 (68%), Positives = 38/47 (80%)
 Frame = +1

Query: 229 VMREVYEKVVPSLVDREVFWERYFYRVFKLKQVEDARESLVKRAISG 369
           V+ E+YEKVVPS +D E FW RYFYR+ KL+Q EDAR  LVKRA+SG
Sbjct: 194 VVDEIYEKVVPSRIDDEGFWSRYFYRLDKLRQAEDARAKLVKRALSG 240


>ref|XP_003541642.1| PREDICTED: uncharacterized protein LOC100817191 [Glycine max]
          Length = 447

 Score = 68.9 bits (167), Expect = 9e-10
 Identities = 32/47 (68%), Positives = 37/47 (78%)
 Frame = +1

Query: 229 VMREVYEKVVPSLVDREVFWERYFYRVFKLKQVEDARESLVKRAISG 369
           V+ E+YEKVVPS +D E FW RYFYR+ KL+Q ED R  LVKRAISG
Sbjct: 199 VVDEIYEKVVPSRIDDESFWSRYFYRLDKLRQAEDTRAKLVKRAISG 245


Top