BLASTX nr result

ID: Coptis23_contig00029478 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029478
         (417 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314666.1| predicted protein [Populus trichocarpa] gi|2...    80   2e-13
emb|CAN66770.1| hypothetical protein VITISV_013810 [Vitis vinifera]    78   8e-13
emb|CBI26300.3| unnamed protein product [Vitis vinifera]               75   4e-12
ref|XP_002265460.1| PREDICTED: protein IQ-DOMAIN 14-like [Vitis ...    75   4e-12
ref|XP_003638200.1| Vacuolar protein sorting-associated protein-...    75   7e-12

>ref|XP_002314666.1| predicted protein [Populus trichocarpa] gi|222863706|gb|EEF00837.1|
           predicted protein [Populus trichocarpa]
          Length = 430

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 5/89 (5%)
 Frame = -3

Query: 253 MGKAGKWIKNFLTGKKEKGKGGSVRNQHCSYSAEFPTVPVA--PTTPKENRRWSFRRS-- 86
           MGK GKW+++FLTGKK+K K     NQ+ + S E P  P++  PTT KE RRWSFRRS  
Sbjct: 1   MGKPGKWLRSFLTGKKDKEKEKGTSNQNSTPSIENPVTPISIPPTTAKEKRRWSFRRSSA 60

Query: 85  -ATASRDFSSMDLIATTLQSAVQSMLETE 2
            A A +D +  +  ATT  +AVQ   ++E
Sbjct: 61  TAAAPKDSNYTEPTATTQPAAVQDTFDSE 89


>emb|CAN66770.1| hypothetical protein VITISV_013810 [Vitis vinifera]
          Length = 570

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 6/90 (6%)
 Frame = -3

Query: 253 MGKAGKWIKNFLTGKKEKGKGGSVRNQHC-SYSAEFPTVP--VAPTTPKENRRWSFRRSA 83
           MGK GKWI+NFLTGKK+K +      +   S + E P+ P  + PTTPKE RRWSFRRS+
Sbjct: 1   MGKTGKWIRNFLTGKKDKERDREKDKEKLNSIAIENPSTPILIPPTTPKEKRRWSFRRSS 60

Query: 82  TAS---RDFSSMDLIATTLQSAVQSMLETE 2
             S   +D  SMD IATT   A Q++L++E
Sbjct: 61  ATSAGHKDSISMDTIATT-PPAGQTILDSE 89


>emb|CBI26300.3| unnamed protein product [Vitis vinifera]
          Length = 430

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 6/90 (6%)
 Frame = -3

Query: 253 MGKAGKWIKNFLTGKKEKGKGGSVRNQHC-SYSAEFPTVP--VAPTTPKENRRWSFRRSA 83
           MGK GKWI+NFLTGKK+K +      +   S + E P+ P  + PTTPKE RRWSFRRS+
Sbjct: 1   MGKTGKWIRNFLTGKKDKERDREKDKEKLNSIAIENPSTPILIPPTTPKEKRRWSFRRSS 60

Query: 82  TAS---RDFSSMDLIATTLQSAVQSMLETE 2
             S   +D  S+D IATT   A Q +L++E
Sbjct: 61  ATSAGHKDSISVDTIATT-PPAGQPILDSE 89


>ref|XP_002265460.1| PREDICTED: protein IQ-DOMAIN 14-like [Vitis vinifera]
          Length = 464

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 6/90 (6%)
 Frame = -3

Query: 253 MGKAGKWIKNFLTGKKEKGKGGSVRNQHC-SYSAEFPTVP--VAPTTPKENRRWSFRRSA 83
           MGK GKWI+NFLTGKK+K +      +   S + E P+ P  + PTTPKE RRWSFRRS+
Sbjct: 1   MGKTGKWIRNFLTGKKDKERDREKDKEKLNSIAIENPSTPILIPPTTPKEKRRWSFRRSS 60

Query: 82  TAS---RDFSSMDLIATTLQSAVQSMLETE 2
             S   +D  S+D IATT   A Q +L++E
Sbjct: 61  ATSAGHKDSISVDTIATT-PPAGQPILDSE 89


>ref|XP_003638200.1| Vacuolar protein sorting-associated protein-like protein [Medicago
           truncatula] gi|355504135|gb|AES85338.1| Vacuolar protein
           sorting-associated protein-like protein [Medicago
           truncatula]
          Length = 539

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 43/85 (50%), Positives = 56/85 (65%), Gaps = 8/85 (9%)
 Frame = -3

Query: 253 MGKAGKWIKNFLTGKK--EKGKGGSVRNQHCSYSAEFPTVPVAPTTPKENRRWSFRRSA- 83
           MGK GKW+KNFLTGKK  EK K     NQ+ S   E PT PV+ T  KE +RWSFRRS+ 
Sbjct: 1   MGKKGKWLKNFLTGKKDKEKEKEKCNTNQNFSNGTENPTTPVSTTPSKEKKRWSFRRSSA 60

Query: 82  ----TASRDFSSMDLIAT-TLQSAV 23
               TAS++ ++ ++ A+ T+QS V
Sbjct: 61  TATPTASKELNNSEITASMTVQSTV 85


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