BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029451
         (1567 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280635.2| PREDICTED: uncharacterized protein LOC100263...   600   e-169
ref|XP_002512387.1| DNA polymerase zeta catalytic subunit, putat...   582   e-164
emb|CBI36804.3| unnamed protein product [Vitis vinifera]              565   e-159
ref|XP_002888602.1| hypothetical protein ARALYDRAFT_894489 [Arab...   565   e-158
gb|AAC18785.1| Similar to putative DNA polymerase gb|M29683 from...   564   e-158

>ref|XP_002280635.2| PREDICTED: uncharacterized protein LOC100263126 [Vitis vinifera]
          Length = 2002

 Score =  600 bits (1547), Expect = e-169
 Identities = 314/457 (68%), Positives = 362/457 (79%), Gaps = 3/457 (0%)
 Frame = +3

Query: 198  GHVPHMESSSDQLIQK--DSRNSMKVNNLSEVMTERHSEGTLMKGNEHIDSCQDISQISG 371
            G V H++   DQ   +  D+ N+ K     +V  +   +G +MK  +  +  QDISQISG
Sbjct: 229  GSVSHVKPVLDQQNHEIHDNLNAKKNAFHDKVPEKTQVKGNIMKVKKCTNCSQDISQISG 288

Query: 372  PDMRSKLTPLSQTGFRDPASVGAGQQLTLMSIEVQAESRGDLRPDPRNDAVTVIAVRIQD 551
            P+ +SK TPLSQ GFRDPASVG GQQ+TL+SIE+QAESRGDLRPDPR DA+ VI + IQ+
Sbjct: 289  PEEKSKPTPLSQIGFRDPASVGGGQQVTLLSIEIQAESRGDLRPDPRYDAINVIVLLIQE 348

Query: 552  DNDLGLETFVLLRGNEGESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSDPDILMGW 731
            D+D  LE FVL R N  E  QR LD ISGC V+V  EEK LF  F+ I+ S DPDIL+GW
Sbjct: 349  DDDSALEVFVLCRSNI-EPCQRKLDGISGCKVLVSSEEKLLFDDFINIICSFDPDILIGW 407

Query: 732  EIQGGSLGFLAERAAHLGILLLSTISRTPS-CETEARNSATGEIRVQDDLLPEALVTDPA 908
            +IQGGSLGFLAERA+HLGI LL+ ISRTPS  +T +RN    E RV D++LPE LV D  
Sbjct: 408  DIQGGSLGFLAERASHLGIGLLNKISRTPSETKTASRNFEIPEKRVADEMLPENLVDDSV 467

Query: 909  VFGNTIIEDEWGRTHASGVHVGGRIVLNIWRLMRGEVKLNMYTMEAVAEEVLRRKVPLIP 1088
            +    IIEDEWGRTHASGVHVGGRIVLN+WRLMRGE+KLNMYT E+VAE VLR+K+P I 
Sbjct: 468  LLEEAIIEDEWGRTHASGVHVGGRIVLNVWRLMRGEIKLNMYTAESVAEAVLRQKIPSIR 527

Query: 1089 PRILAQWFSSGPGRARFRCIEYIIERTKLNLEIMDQLDMINRTSELARVFGIDFFSVLSR 1268
             R+L +WFSSGPGRAR+R IEY+I+R KLN EIM+QLDMINRTSELARVFGIDFFSVLSR
Sbjct: 528  NRVLTKWFSSGPGRARYRSIEYVIQRAKLNFEIMNQLDMINRTSELARVFGIDFFSVLSR 587

Query: 1269 GSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESRFYADPVVVLDFQS 1448
            GSQY VESMFLRLAHTQN+LAISPG QQVA+QPAMECLPLVMEPES FYADPVVVLDFQS
Sbjct: 588  GSQYHVESMFLRLAHTQNFLAISPGPQQVATQPAMECLPLVMEPESGFYADPVVVLDFQS 647

Query: 1449 LYPSMIIAYNLCFCTCLGKVISAKEDILGVCSYIPDP 1559
            LYPSMIIAYNLC+ TCLGKV  +K D+LGV  Y PDP
Sbjct: 648  LYPSMIIAYNLCYSTCLGKVAPSKADVLGVSIYSPDP 684


>ref|XP_002512387.1| DNA polymerase zeta catalytic subunit, putative [Ricinus communis]
            gi|223548348|gb|EEF49839.1| DNA polymerase zeta catalytic
            subunit, putative [Ricinus communis]
          Length = 2066

 Score =  582 bits (1500), Expect = e-164
 Identities = 303/456 (66%), Positives = 355/456 (77%), Gaps = 3/456 (0%)
 Frame = +3

Query: 204  VPHMESSSDQLIQKDSR--NSMKVNNLSEVMTERHSEGTLMKGNEHIDSCQDISQISGPD 377
            V ++    DQ+ Q++ +  NS    N  E+    H +    K N   +   D+SQISGP+
Sbjct: 252  VSNVRLIEDQVQQEEHQIINSEFHPNTDELQRPLHHKENNAKLNACTECSIDLSQISGPN 311

Query: 378  MRSKLTPLSQTGFRDPASVGAGQQLTLMSIEVQAESRGDLRPDPRNDAVTVIAVRIQDDN 557
             RS+ TPLSQ GFRDPAS GAGQQLT++SIEVQAESRGDLRPDPR DA+  +A+  Q+DN
Sbjct: 312  ERSRPTPLSQIGFRDPASTGAGQQLTMLSIEVQAESRGDLRPDPRFDAINTVALAFQNDN 371

Query: 558  DLGLETFVLLRGNEGESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSDPDILMGWEI 737
            D  +E  VLL  N+ ES+ R+ D +S   V+   EE HL  HF++I+ S DPDILMGW+I
Sbjct: 372  DSTVEVQVLLHSNK-ESYARSSDGLSVNKVLYFSEEVHLVTHFIRIIGSVDPDILMGWDI 430

Query: 738  QGGSLGFLAERAAHLGILLLSTISRTP-SCETEARNSATGEIRVQDDLLPEALVTDPAVF 914
            QGGSLGFLAERAAHLG+ LL+ ISRTP      AR +   +  +   +L E+LV + A+ 
Sbjct: 431  QGGSLGFLAERAAHLGMGLLNNISRTPLEANIGARETEISDKEILATMLDESLVAESALV 490

Query: 915  GNTIIEDEWGRTHASGVHVGGRIVLNIWRLMRGEVKLNMYTMEAVAEEVLRRKVPLIPPR 1094
               +IEDEWGRTHASGVHVGGRIVLNIWRL+R EVKLN+YT+EAV E VLRRK+P IP R
Sbjct: 491  EQAVIEDEWGRTHASGVHVGGRIVLNIWRLIRNEVKLNLYTVEAVGEAVLRRKIPSIPYR 550

Query: 1095 ILAQWFSSGPGRARFRCIEYIIERTKLNLEIMDQLDMINRTSELARVFGIDFFSVLSRGS 1274
            +L +WFSSGPGRAR+RCIEY++ R KLNLEIM+QLDMINRTSELARVFGIDFFSVLSRGS
Sbjct: 551  VLTKWFSSGPGRARYRCIEYMVHRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGS 610

Query: 1275 QYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESRFYADPVVVLDFQSLY 1454
            QYRVESM LRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPES FYADPVVVLDFQSLY
Sbjct: 611  QYRVESMLLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLY 670

Query: 1455 PSMIIAYNLCFCTCLGKVISAKEDILGVCSYIPDPQ 1562
            PSMIIAYNLCFCTCLG V S+K + LGV S+ PDP+
Sbjct: 671  PSMIIAYNLCFCTCLGNVSSSKVNTLGVSSFSPDPR 706


>emb|CBI36804.3| unnamed protein product [Vitis vinifera]
          Length = 1732

 Score =  565 bits (1457), Expect = e-159
 Identities = 298/456 (65%), Positives = 343/456 (75%), Gaps = 2/456 (0%)
 Frame = +3

Query: 198  GHVPHMESSSDQLIQK--DSRNSMKVNNLSEVMTERHSEGTLMKGNEHIDSCQDISQISG 371
            G V H++   DQ   +  D+ N+ K     +V  +   +G +MK  +  +  QDISQISG
Sbjct: 815  GSVSHVKPVLDQQNHEIHDNLNAKKNAFHDKVPEKTQVKGNIMKVKKCTNCSQDISQISG 874

Query: 372  PDMRSKLTPLSQTGFRDPASVGAGQQLTLMSIEVQAESRGDLRPDPRNDAVTVIAVRIQD 551
            P+ +SK TPLSQ GFRDPASVG GQQ+TL+SIE+QAESRGDLRPDPR DA+ VI + IQ+
Sbjct: 875  PEEKSKPTPLSQIGFRDPASVGGGQQVTLLSIEIQAESRGDLRPDPRYDAINVIVLLIQE 934

Query: 552  DNDLGLETFVLLRGNEGESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSDPDILMGW 731
            D+D  LE FVL R N  E  QR LD ISGC V+V  EEK LF  F+ I+ S DPDIL+GW
Sbjct: 935  DDDSALEVFVLCRSNI-EPCQRKLDGISGCKVLVSSEEKLLFDDFINIICSFDPDILIGW 993

Query: 732  EIQGGSLGFLAERAAHLGILLLSTISRTPSCETEARNSATGEIRVQDDLLPEALVTDPAV 911
            +IQGGSLGFLAERA+HL                             D++LPE LV D  +
Sbjct: 994  DIQGGSLGFLAERASHLA----------------------------DEMLPENLVDDSVL 1025

Query: 912  FGNTIIEDEWGRTHASGVHVGGRIVLNIWRLMRGEVKLNMYTMEAVAEEVLRRKVPLIPP 1091
                IIEDEWGRTHASGVHVGGRIVLN+WRLMRGE+KLNMYT E+VAE VLR+K+P I  
Sbjct: 1026 LEEAIIEDEWGRTHASGVHVGGRIVLNVWRLMRGEIKLNMYTAESVAEAVLRQKIPSIRN 1085

Query: 1092 RILAQWFSSGPGRARFRCIEYIIERTKLNLEIMDQLDMINRTSELARVFGIDFFSVLSRG 1271
            R+L +WFSSGPGRAR+R IEY+I+R KLN EIM+QLDMINRTSELARVFGIDFFSVLSRG
Sbjct: 1086 RVLTKWFSSGPGRARYRSIEYVIQRAKLNFEIMNQLDMINRTSELARVFGIDFFSVLSRG 1145

Query: 1272 SQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESRFYADPVVVLDFQSL 1451
            SQY VESMFLRLAHTQN+LAISPG QQVA+QPAMECLPLVMEPES FYADPVVVLDFQSL
Sbjct: 1146 SQYHVESMFLRLAHTQNFLAISPGPQQVATQPAMECLPLVMEPESGFYADPVVVLDFQSL 1205

Query: 1452 YPSMIIAYNLCFCTCLGKVISAKEDILGVCSYIPDP 1559
            YPSMIIAYNLC+ TCLGKV  +K D+LGV  Y PDP
Sbjct: 1206 YPSMIIAYNLCYSTCLGKVAPSKADVLGVSIYSPDP 1241


>ref|XP_002888602.1| hypothetical protein ARALYDRAFT_894489 [Arabidopsis lyrata subsp.
            lyrata] gi|297334443|gb|EFH64861.1| hypothetical protein
            ARALYDRAFT_894489 [Arabidopsis lyrata subsp. lyrata]
          Length = 1899

 Score =  565 bits (1455), Expect = e-158
 Identities = 294/438 (67%), Positives = 344/438 (78%), Gaps = 4/438 (0%)
 Frame = +3

Query: 255  NSMKVNNLSEVMTERHSE----GTLMKGNEHIDSCQDISQISGPDMRSKLTPLSQTGFRD 422
            N++ VN+ S   TE   +    GT +  N  I   Q++SQISGPD +S  TPLSQ GFRD
Sbjct: 975  NNVFVNSESNTYTESEIDLKRRGTFLNLNSQIS--QEMSQISGPDGKSGPTPLSQMGFRD 1032

Query: 423  PASVGAGQQLTLMSIEVQAESRGDLRPDPRNDAVTVIAVRIQDDNDLGLETFVLLRGNEG 602
            PAS+GAGQQLT++SIEV AESRGDLRPDPR D+V VIA+ +Q+D+    E FVLL   + 
Sbjct: 1033 PASMGAGQQLTVLSIEVHAESRGDLRPDPRFDSVNVIALVVQNDDSFVAEVFVLLVSPDS 1092

Query: 603  ESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSDPDILMGWEIQGGSLGFLAERAAHL 782
               QRN+D +SGC   V LEE+ LF +F++ +   DPDIL+GW+IQGGS+GFLAERAA L
Sbjct: 1093 ID-QRNVDGLSGCKFSVFLEERQLFSYFIETLCKWDPDILLGWDIQGGSIGFLAERAAQL 1151

Query: 783  GILLLSTISRTPSCETEARNSATGEIRVQDDLLPEALVTDPAVFGNTIIEDEWGRTHASG 962
            GI  L+ ISRTPS  T  RN +  + ++  +LLP+ LV DPA     +IEDEWGRTHASG
Sbjct: 1152 GIRFLNNISRTPSPTT--RNDSDNKRKLGKNLLPDPLVADPAQVEEVVIEDEWGRTHASG 1209

Query: 963  VHVGGRIVLNIWRLMRGEVKLNMYTMEAVAEEVLRRKVPLIPPRILAQWFSSGPGRARFR 1142
            VHVGGRIVLN WRL+RGEVKLNMYT+EAV+E VLR+K+P IP ++L +WFSSGP  AR+R
Sbjct: 1210 VHVGGRIVLNAWRLIRGEVKLNMYTIEAVSEAVLRQKIPSIPYKVLTEWFSSGPAGARYR 1269

Query: 1143 CIEYIIERTKLNLEIMDQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQN 1322
            CIEY++ RT LNLEIM QLDMINRTSELARVFGIDFFSVLSRGSQYRVESM LRLAHTQN
Sbjct: 1270 CIEYVVRRTNLNLEIMSQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQN 1329

Query: 1323 YLAISPGNQQVASQPAMECLPLVMEPESRFYADPVVVLDFQSLYPSMIIAYNLCFCTCLG 1502
            YLAISPGNQQVASQPAMEC+PLVMEPES FY DPV+VLDFQSLYPSMIIAYNLCF TCLG
Sbjct: 1330 YLAISPGNQQVASQPAMECVPLVMEPESAFYDDPVIVLDFQSLYPSMIIAYNLCFSTCLG 1389

Query: 1503 KVISAKEDILGVCSYIPD 1556
            K+   K + LGV SY  D
Sbjct: 1390 KLAHLKMNTLGVSSYSLD 1407


>gb|AAC18785.1| Similar to putative DNA polymerase gb|M29683 from S. cerevisiae
            [Arabidopsis thaliana]
          Length = 1894

 Score =  564 bits (1454), Expect = e-158
 Identities = 303/509 (59%), Positives = 367/509 (72%), Gaps = 16/509 (3%)
 Frame = +3

Query: 78   NDGKT------ASEPPKLQSVLA------DDLELIYSQEHLVNSFHEFSDKFGHVPHMES 221
            NDG        A  PP + SVL        D  +   ++ L ++ ++    F  +    +
Sbjct: 897  NDGSNLYLLTPAFSPPSVDSVLQWISNDKGDSNIDSEKQPLRDNHNDRGASFTDLASASN 956

Query: 222  SSDQLIQKDSRNSMKVNNLSEVMTERHSE----GTLMKGNEHIDSCQDISQISGPDMRSK 389
                    +  N++ VN+ S   TE   +    GT +  N      Q++SQISGPD +S 
Sbjct: 957  VVSVSEHVEQHNNLFVNSESNAYTESEIDLKPKGTFLNLNLQASVSQELSQISGPDGKSG 1016

Query: 390  LTPLSQTGFRDPASVGAGQQLTLMSIEVQAESRGDLRPDPRNDAVTVIAVRIQDDNDLGL 569
             TPLSQ GFRDPAS+GAGQQLT++SIEV AESRGDLRPDPR D+V VIA+ +Q+D+    
Sbjct: 1017 PTPLSQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSVNVIALVVQNDDSFVA 1076

Query: 570  ETFVLLRGNEGESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSDPDILMGWEIQGGS 749
            E FVLL   +    QRN+D +SGC + V LEE+ LF +F++ +   DPD+L+GW+IQGGS
Sbjct: 1077 EVFVLLFSPDSID-QRNVDGLSGCKLSVFLEERQLFRYFIETLCKWDPDVLLGWDIQGGS 1135

Query: 750  LGFLAERAAHLGILLLSTISRTPSCETEARNSATGEIRVQDDLLPEALVTDPAVFGNTII 929
            +GFLAERAA LGI  L+ ISRTPS  T   N++  + ++ ++LLP+ LV +PA     +I
Sbjct: 1136 IGFLAERAAQLGIRFLNNISRTPSPTTT--NNSDNKRKLGNNLLPDPLVANPAQVEEVVI 1193

Query: 930  EDEWGRTHASGVHVGGRIVLNIWRLMRGEVKLNMYTMEAVAEEVLRRKVPLIPPRILAQW 1109
            EDEWGRTHASGVHVGGRIVLN WRL+RGEVKLNMYT+EAV+E VLR+KVP IP ++L +W
Sbjct: 1194 EDEWGRTHASGVHVGGRIVLNAWRLIRGEVKLNMYTIEAVSEAVLRQKVPSIPYKVLTEW 1253

Query: 1110 FSSGPGRARFRCIEYIIERTKLNLEIMDQLDMINRTSELARVFGIDFFSVLSRGSQYRVE 1289
            FSSGP  AR+RCIEY+I R  LNLEIM QLDMINRTSELARVFGIDFFSVLSRGSQYRVE
Sbjct: 1254 FSSGPAGARYRCIEYVIRRANLNLEIMSQLDMINRTSELARVFGIDFFSVLSRGSQYRVE 1313

Query: 1290 SMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESRFYADPVVVLDFQSLYPSMII 1469
            SM LRLAHTQNYLAISPGNQQVASQPAMEC+PLVMEPES FY DPV+VLDFQSLYPSMII
Sbjct: 1314 SMLLRLAHTQNYLAISPGNQQVASQPAMECVPLVMEPESAFYDDPVIVLDFQSLYPSMII 1373

Query: 1470 AYNLCFCTCLGKVISAKEDILGVCSYIPD 1556
            AYNLCF TCLGK+   K + LGV SY  D
Sbjct: 1374 AYNLCFSTCLGKLAHLKMNTLGVSSYSLD 1402