BLASTX nr result

ID: Coptis23_contig00029444 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029444
         (1140 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277197.1| PREDICTED: 3-oxoacyl-[acyl-carrier-protein] ...    86   1e-14
ref|XP_002302852.1| predicted protein [Populus trichocarpa] gi|2...    86   2e-14
ref|XP_003571262.1| PREDICTED: 3-oxoacyl-[acyl-carrier-protein] ...    85   4e-14
dbj|BAK07782.1| predicted protein [Hordeum vulgare subsp. vulgare]     85   4e-14
pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas gi|56...    84   5e-14

>ref|XP_002277197.1| PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial
           [Vitis vinifera] gi|297739239|emb|CBI28890.3| unnamed
           protein product [Vitis vinifera]
          Length = 463

 Score = 86.3 bits (212), Expect = 1e-14
 Identities = 44/65 (67%), Positives = 49/65 (75%)
 Frame = +1

Query: 562 VETSTTMLEKFQGIAPLTLNLSSPDPIFRVTFMPLTTSTEMNIRAALSNSFGFGGTNASL 741
           VE    +L    GIAPLTLNL+ PDP+F   +MPLT S EM +RAALSNSFGFGGTNASL
Sbjct: 398 VEAIFAVLAIHHGIAPLTLNLTRPDPVFSGGYMPLTASREMPVRAALSNSFGFGGTNASL 457

Query: 742 LFASA 756
           LF SA
Sbjct: 458 LFTSA 462


>ref|XP_002302852.1| predicted protein [Populus trichocarpa] gi|222844578|gb|EEE82125.1|
           predicted protein [Populus trichocarpa]
          Length = 415

 Score = 85.9 bits (211), Expect = 2e-14
 Identities = 43/64 (67%), Positives = 48/64 (75%)
 Frame = +1

Query: 562 VETSTTMLEKFQGIAPLTLNLSSPDPIFRVTFMPLTTSTEMNIRAALSNSFGFGGTNASL 741
           VE    +L    GIAPLTLNL+ PDP+F+  FMPL  S EM +RAALSNSFGFGGTNASL
Sbjct: 351 VEAIFAILAVHHGIAPLTLNLNKPDPLFKDNFMPLIASKEMPVRAALSNSFGFGGTNASL 410

Query: 742 LFAS 753
           LF S
Sbjct: 411 LFTS 414


>ref|XP_003571262.1| PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase,
           mitochondrial-like [Brachypodium distachyon]
          Length = 460

 Score = 84.7 bits (208), Expect = 4e-14
 Identities = 42/66 (63%), Positives = 49/66 (74%)
 Frame = +1

Query: 562 VETSTTMLEKFQGIAPLTLNLSSPDPIFRVTFMPLTTSTEMNIRAALSNSFGFGGTNASL 741
           VE   T+L    G+AP TLNL  PDP+F   FMPLT + +M IRAA+SNSFGFGGTNASL
Sbjct: 395 VEAIFTVLAIHHGLAPPTLNLEKPDPLFEGAFMPLTAAKKMPIRAAISNSFGFGGTNASL 454

Query: 742 LFASAP 759
           LF+S P
Sbjct: 455 LFSSPP 460


>dbj|BAK07782.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 462

 Score = 84.7 bits (208), Expect = 4e-14
 Identities = 42/66 (63%), Positives = 48/66 (72%)
 Frame = +1

Query: 562 VETSTTMLEKFQGIAPLTLNLSSPDPIFRVTFMPLTTSTEMNIRAALSNSFGFGGTNASL 741
           VE   T+L    G+AP TLNL  PDP+F   FMPLT S +M IRAA+SNSFGFGGTNASL
Sbjct: 397 VEAIFTVLAIHHGVAPSTLNLEQPDPLFEGAFMPLTASKKMPIRAAISNSFGFGGTNASL 456

Query: 742 LFASAP 759
           LF+  P
Sbjct: 457 LFSCPP 462


>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
           gi|56966611|pdb|1W0I|B Chain B, Arabidopsis Thaliana
           Mitochondrial Kas gi|126030848|pdb|2IX4|A Chain A,
           Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
           Synthase Hexanoic Acid Complex gi|126030849|pdb|2IX4|B
           Chain B, Arabidopsis Thaliana Mitochondrial
           Beta-Ketoacyl Acp Synthase Hexanoic Acid Complex
          Length = 431

 Score = 84.3 bits (207), Expect = 5e-14
 Identities = 41/64 (64%), Positives = 50/64 (78%)
 Frame = +1

Query: 562 VETSTTMLEKFQGIAPLTLNLSSPDPIFRVTFMPLTTSTEMNIRAALSNSFGFGGTNASL 741
           VE   ++L    G+AP+TLN+ +PDPIF   FMPLTTS +M +R A+SNSFGFGGTNASL
Sbjct: 367 VEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASL 426

Query: 742 LFAS 753
           LFAS
Sbjct: 427 LFAS 430


Top