BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029426
         (334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             124   1e-26
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             122   2e-26
gb|AAD22505.1| putative retroelement gag/pol polyprotein [Arabid...   114   6e-24
emb|CAN84035.1| hypothetical protein VITISV_016995 [Vitis vinifera]   113   1e-23
emb|CAN76096.1| hypothetical protein VITISV_005210 [Vitis vinifera]   112   3e-23

>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  124 bits (310), Expect = 1e-26
 Identities = 56/110 (50%), Positives = 81/110 (73%)
 Frame = +2

Query: 5   WNDQCHQAFSTLKEYLTTPPVLAKPKDGETLGLYLATSDFAISSVLFREDNNSEKPIYFT 184
           W+++C +AF  LK YLTTPP+L+KP+  E L LY++ S+ A+S VL RED   +KPIY+ 
Sbjct: 288 WDEKCEEAFGQLKAYLTTPPILSKPEVDEKLYLYVSVSNHAVSGVLVREDRGEQKPIYYV 347

Query: 185 SKTLTPVEQNYSHVERTVLALLYSDRKFRLYFQAHPIKVLTDLPLKKILH 334
           SK++T  E  Y+ +E+  LA++ S RK R YFQ+HP++VLT+ PL+ ILH
Sbjct: 348 SKSMTDPETRYTMMEKLALAVVTSARKLRPYFQSHPVQVLTNQPLRTILH 397


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  122 bits (307), Expect = 2e-26
 Identities = 58/110 (52%), Positives = 77/110 (70%)
 Frame = +2

Query: 5    WNDQCHQAFSTLKEYLTTPPVLAKPKDGETLGLYLATSDFAISSVLFREDNNSEKPIYFT 184
            W+    +AF  LK+YL+TPP+L KP+ GETL LY+A SD A+SSVL RED   ++PI++T
Sbjct: 1091 WDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRGEQRPIFYT 1150

Query: 185  SKTLTPVEQNYSHVERTVLALLYSDRKFRLYFQAHPIKVLTDLPLKKILH 334
            SK+L   E  Y  +E+  LA++ S RK R YFQ+H I VLTD PL+  LH
Sbjct: 1151 SKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQPLRVALH 1200


>gb|AAD22505.1| putative retroelement gag/pol polyprotein [Arabidopsis thaliana]
          Length = 1212

 Score =  114 bits (286), Expect = 6e-24
 Identities = 55/110 (50%), Positives = 78/110 (70%)
 Frame = +2

Query: 5   WNDQCHQAFSTLKEYLTTPPVLAKPKDGETLGLYLATSDFAISSVLFREDNNSEKPIYFT 184
           W+++C +AF  LK YL+ P VLAKP+ GE L LY++ S+ AIS VL R + + E+PI++ 
Sbjct: 588 WDERCEEAFRQLKSYLSEPLVLAKPEFGERLFLYISVSENAISGVLVRVERSDERPIFYV 647

Query: 185 SKTLTPVEQNYSHVERTVLALLYSDRKFRLYFQAHPIKVLTDLPLKKILH 334
           SK+ + VE  Y  +E+  LA++ + RK R YFQ+HPI VLT LPL+ ILH
Sbjct: 648 SKSFSDVETRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSLPLRTILH 697


>emb|CAN84035.1| hypothetical protein VITISV_016995 [Vitis vinifera]
          Length = 965

 Score =  113 bits (283), Expect = 1e-23
 Identities = 57/111 (51%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
 Frame = +2

Query: 5   WNDQCHQAFSTLKEYLTTPPVLAKPKDGETLGLYLATSDFAISSVLFREDNNSE-KPIYF 181
           W D C  AF  +K YL  PP+L+ P   E L +YLA S++AIS+VLFR  +  E KP+Y+
Sbjct: 288 WTDSCQNAFEKIKHYLMQPPILSSPIPKEKLYMYLAVSEWAISAVLFRYPSPKEQKPVYY 347

Query: 182 TSKTLTPVEQNYSHVERTVLALLYSDRKFRLYFQAHPIKVLTDLPLKKILH 334
            S+ L  VE  YS +E T LAL  + +K R YFQAHP+ VLTD PL+ ILH
Sbjct: 348 VSRALADVETRYSKMELTALALRSAAQKLRPYFQAHPVIVLTDQPLRSILH 398


>emb|CAN76096.1| hypothetical protein VITISV_005210 [Vitis vinifera]
          Length = 946

 Score =  112 bits (280), Expect = 3e-23
 Identities = 58/111 (52%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
 Frame = +2

Query: 5   WNDQCHQAFSTLKEYLTTPPVLAKPKDGETLGLYLATSDFAISSVLFREDNNSE-KPIYF 181
           W D C  AF  +K  L  PP+L+ P   E L +YLA S++AIS+VLFR  +  E KPIY+
Sbjct: 257 WTDSCQNAFEKIKHCLMQPPILSSPIPKEKLYMYLAVSEWAISAVLFRCPSPKEQKPIYY 316

Query: 182 TSKTLTPVEQNYSHVERTVLALLYSDRKFRLYFQAHPIKVLTDLPLKKILH 334
            S+ LT VE  YS +E TVLAL  + +K R YFQAHP+ +LTD PL+ ILH
Sbjct: 317 ISRALTDVETRYSKMELTVLALRSAAQKLRPYFQAHPVIILTDQPLRNILH 367