BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029403
         (272 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    75   6e-12
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    74   1e-11
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    73   2e-11
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    73   3e-11
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers...    71   1e-10

>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 32/89 (35%), Positives = 51/89 (57%)
 Frame = +1

Query: 1   AVAQATPLYAMATYKVPKSTCNKLDKAYRQFWWHGTEDSKSLHTMGWDGICKPKXXXXXX 180
           AV  + P++ M+T  +PKST + LDK  R F W  +   +  H + W  +CKP+      
Sbjct: 320 AVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLG 379

Query: 181 XXXXXDMNKAMLAKLVWKAVKDNTSIWAK 267
                DMNKA+L+K+ W+ ++D  S+WA+
Sbjct: 380 IRKAQDMNKALLSKVGWRLIQDYHSLWAR 408


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 33/89 (37%), Positives = 50/89 (56%)
 Frame = +1

Query: 1   AVAQATPLYAMATYKVPKSTCNKLDKAYRQFWWHGTEDSKSLHTMGWDGICKPKXXXXXX 180
           AV  + P++ M+   +P ST + LD+  R F W  T + K  H + W  ICKPK      
Sbjct: 658 AVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIG 717

Query: 181 XXXXXDMNKAMLAKLVWKAVKDNTSIWAK 267
                DMNKA++AK+ W+ ++D  S+WA+
Sbjct: 718 LRSARDMNKALVAKVGWRLLQDKESLWAR 746


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 30/89 (33%), Positives = 49/89 (55%)
 Frame = +1

Query: 1   AVAQATPLYAMATYKVPKSTCNKLDKAYRQFWWHGTEDSKSLHTMGWDGICKPKXXXXXX 180
           AV  + P++ M++  +P S   +LDK  R F W  T + +  H + W  +C+PK      
Sbjct: 593 AVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLG 652

Query: 181 XXXXXDMNKAMLAKLVWKAVKDNTSIWAK 267
                DMN+A+LAK+ W+ + D  S+WA+
Sbjct: 653 LRASKDMNRALLAKVGWRLLNDKVSLWAR 681


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 31/89 (34%), Positives = 48/89 (53%)
 Frame = +1

Query: 1   AVAQATPLYAMATYKVPKSTCNKLDKAYRQFWWHGTEDSKSLHTMGWDGICKPKXXXXXX 180
           +VA   P Y M+ +++PK+  +KL  A  +FWW    DS+ +H M WD +C  K      
Sbjct: 579 SVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLG 638

Query: 181 XXXXXDMNKAMLAKLVWKAVKDNTSIWAK 267
                D N A+LAK +W+ +    S++AK
Sbjct: 639 FRNVDDFNSALLAKQLWRLITAPDSLFAK 667


>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 29/89 (32%), Positives = 49/89 (55%)
 Frame = +1

Query: 1   AVAQATPLYAMATYKVPKSTCNKLDKAYRQFWWHGTEDSKSLHTMGWDGICKPKXXXXXX 180
           AVA A P++AM+ +K+PK+TC  L  A   FWW   +  + +H + W+ +C PK      
Sbjct: 643 AVAMAMPVFAMSCFKLPKTTCTNLASAMADFWWSANDHQRKIHWLSWEKLCLPKEHGGLG 702

Query: 181 XXXXXDMNKAMLAKLVWKAVKDNTSIWAK 267
                  N+A+LAK  W+ ++    ++A+
Sbjct: 703 FRDIGLFNQALLAKQAWRLLQFPDCLFAR 731