BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029349
         (499 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group...   207   9e-52
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza...   206   2e-51
gb|ABA95820.1| retrotransposon protein, putative, unclassified [...   203   1e-50
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]           203   1e-50
gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group]     194   8e-48

>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711922|gb|ABF99717.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1335

 Score =  207 bits (526), Expect = 9e-52
 Identities = 99/169 (58%), Positives = 126/169 (74%), Gaps = 12/169 (7%)
 Frame = +1

Query: 25   STPESLPRKTRRVVEIYET------------CNFTYAEPDCFEEVATQKVWVMAMHEEIN 168
            STPES PR+ R +VE+ E+            CN++  EP  F+E      W+ AM +EI+
Sbjct: 808  STPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIH 867

Query: 169  MIQKNQT*EMVDRPEGRDIIGVRCIYKTKFNPDSTVQKHKVRLMAKGYSQKPGIDFYEIF 348
            MI+KN T E+VDRP  R++IGV+ +YKTK NPD +VQK+K RL+AKG+ QKPGID+YE +
Sbjct: 868  MIEKNNTWELVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETY 927

Query: 349  AQVSRLETIRALIALAAQKKWSLYQLDVKSAFLNGELKEEIYVEQPQGF 495
            A V+RLETIR +IALAAQK+W +YQLDVKSAFLNG L EEIYVEQP+GF
Sbjct: 928  APVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGF 976


>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
            gi|31429795|gb|AAP51797.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1350

 Score =  206 bits (523), Expect = 2e-51
 Identities = 99/169 (58%), Positives = 125/169 (73%), Gaps = 12/169 (7%)
 Frame = +1

Query: 25   STPESLPRKTRRVVEIYET------------CNFTYAEPDCFEEVATQKVWVMAMHEEIN 168
            STPES PR+ R +VE+ E+            CN++  EP  F+E      W+ AM +EI+
Sbjct: 731  STPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIH 790

Query: 169  MIQKNQT*EMVDRPEGRDIIGVRCIYKTKFNPDSTVQKHKVRLMAKGYSQKPGIDFYEIF 348
            MI+KN T E+VDRP  R +IGV+ +YKTK NPD +VQK+K RL+AKG+ QKPGID+YE +
Sbjct: 791  MIEKNNTWELVDRPRDRKVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETY 850

Query: 349  AQVSRLETIRALIALAAQKKWSLYQLDVKSAFLNGELKEEIYVEQPQGF 495
            A V+RLETIR +IALAAQK+W +YQLDVKSAFLNG L EEIYVEQP+GF
Sbjct: 851  APVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGF 899


>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  203 bits (516), Expect = 1e-50
 Identities = 98/169 (57%), Positives = 125/169 (73%), Gaps = 12/169 (7%)
 Frame = +1

Query: 25   STPESLPRKTRRVVEIYET------------CNFTYAEPDCFEEVATQKVWVMAMHEEIN 168
            STPES PR+ R +VE+ E+            CN++  EP  F+E      W+ AM +EI+
Sbjct: 598  STPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIH 657

Query: 169  MIQKNQT*EMVDRPEGRDIIGVRCIYKTKFNPDSTVQKHKVRLMAKGYSQKPGIDFYEIF 348
            MI+KN T E+VDRP  R++IGV+ +YKTK N D +VQK+K RL+AKG+ QKPGID+YE +
Sbjct: 658  MIEKNNTWELVDRPRDREVIGVKWVYKTKLNLDGSVQKYKARLVAKGFKQKPGIDYYETY 717

Query: 349  AQVSRLETIRALIALAAQKKWSLYQLDVKSAFLNGELKEEIYVEQPQGF 495
            A V+RLETIR +IALAAQK+W +YQLDVKSAFLNG L EEIYVEQP+GF
Sbjct: 718  APVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGF 766


>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]
          Length = 1314

 Score =  203 bits (516), Expect = 1e-50
 Identities = 98/169 (57%), Positives = 124/169 (73%), Gaps = 12/169 (7%)
 Frame = +1

Query: 25   STPESLPRKTRRVVEIYET------------CNFTYAEPDCFEEVATQKVWVMAMHEEIN 168
            STPES PR+ R +VE+ E+            CN++  EP  F+E      W+ AM +EI+
Sbjct: 815  STPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIH 874

Query: 169  MIQKNQT*EMVDRPEGRDIIGVRCIYKTKFNPDSTVQKHKVRLMAKGYSQKPGIDFYEIF 348
            MI+KN T E VDRP  R++IGV+ +YKTK NPD +VQK+K RL+AKG+ QKPGID+YE +
Sbjct: 875  MIEKNNTWEFVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETY 934

Query: 349  AQVSRLETIRALIALAAQKKWSLYQLDVKSAFLNGELKEEIYVEQPQGF 495
            A V+RLETIR +IALAAQK+W +YQLDVKSAFLNG L EEIYVEQP+ F
Sbjct: 935  APVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEWF 983


>gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1136

 Score =  194 bits (492), Expect = 8e-48
 Identities = 94/162 (58%), Positives = 121/162 (74%)
 Frame = +1

Query: 10   YSSNSSTPESLPRKTRRVVEIYETCNFTYAEPDCFEEVATQKVWVMAMHEEINMIQKNQT 189
            Y+  SS  ES  ++  R  E +E CN++  EP  F+E      W+ AM +EI+MI+KN T
Sbjct: 601  YTGISSKTESTSQQ--RGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIHMIEKNNT 658

Query: 190  *EMVDRPEGRDIIGVRCIYKTKFNPDSTVQKHKVRLMAKGYSQKPGIDFYEIFAQVSRLE 369
             E+VDRP  R++IGV+ +YKTK NPD +VQK+K RL+AKG+ QKPGID+YE +A V+RLE
Sbjct: 659  WELVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYAHVARLE 718

Query: 370  TIRALIALAAQKKWSLYQLDVKSAFLNGELKEEIYVEQPQGF 495
            TI  +IALAAQK+W +YQLDVKSAFLNG L EEIYVEQP+ F
Sbjct: 719  TIHTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPERF 760