BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029300
         (326 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEJ72555.1| putative retroelement polyprotein [Malus x domest...   109   2e-22
emb|CAN83125.1| hypothetical protein VITISV_015109 [Vitis vinifera]    96   2e-18
gb|ADK92880.1| retrotransposon 4 protein [Hypericum perforatum]        83   2e-14
gb|AFN88207.1| integrase core domain containing protein [Phaseol...    82   3e-14
gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi...    80   1e-13

>gb|AEJ72555.1| putative retroelement polyprotein [Malus x domestica]
          Length = 1249

 Score =  109 bits (273), Expect = 2e-22
 Identities = 58/117 (49%), Positives = 73/117 (62%), Gaps = 9/117 (7%)
 Frame = -3

Query: 324 DRVTGKMIGEGIYSHGLYMLEQKSQAMTAQGPNI--------WHKRMGHPSD*VLXXXXX 169
           DR+T K IGEG+Y  GLYML    Q + A+G  +        WH+R+ HPS+ V      
Sbjct: 403 DRITKKKIGEGMYKDGLYMLSL--QPVEARGLQVGFLKNHLLWHRRLRHPSNLVQSHLFK 460

Query: 168 XXXXXXST-CEVCQFSKQTRLPFGTSLSVSRTPFELIHSDVWGPAPIESYDGYRYFV 1
                 +  CEVC FSKQTRLPF  S + S  PFE++HSDVWGPAP+ S+DG+RYFV
Sbjct: 461 TSENVMTQDCEVCHFSKQTRLPFDVSSTKSCKPFEIVHSDVWGPAPLVSFDGFRYFV 517


>emb|CAN83125.1| hypothetical protein VITISV_015109 [Vitis vinifera]
          Length = 1355

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 48/116 (41%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
 Frame = -3

Query: 324 DRVTGKMIGEGIYSHGLYMLEQ--------KSQAMTAQGPNIWHKRMGHPSD*VLXXXXX 169
           DR+T K IGEG   HGL+            ++   +    ++WH+R+GHPS+ V      
Sbjct: 458 DRITKKTIGEGFQLHGLFYFSSDDRLCKGFQASFSSTNKHSLWHQRLGHPSESVFNKIHP 517

Query: 168 XXXXXXSTCEVCQFSKQTRLPFGTSLSVSRTPFELIHSDVWGPAPIESYDGYRYFV 1
                   C++C +SK TRLPF  SLS S   FEL+HSDVWGP  + S DG++YFV
Sbjct: 518 SLPKGTDGCDICHYSKSTRLPFNLSLSKSSEMFELVHSDVWGPFSL-SIDGFKYFV 572


>gb|ADK92880.1| retrotransposon 4 protein [Hypericum perforatum]
          Length = 1347

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 47/112 (41%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
 Frame = -3

Query: 324 DRVTGKMIGEGIYSHGLYMLEQKSQAMTAQGP----NIWHKRMGHPSD*VLXXXXXXXXX 157
           D +T   IGEG   +GLY+LEQ S A+ A       ++WH R+GHPS  VL         
Sbjct: 384 DCLTRTKIGEGSLKNGLYVLEQCSNALAAHSELSSSDLWHLRLGHPSHSVLLQLFPKITS 443

Query: 156 XXSTCEVCQFSKQTRLPFGTSLSVSRTPFELIHSDVWGPAPIESYDGYRYFV 1
               C+ C+ +K  R  F  S SV    F+L+HSDVW  AP  SYD + YFV
Sbjct: 444 SKVVCDSCELAKNYRSSFVCSDSVYNECFQLVHSDVWS-APKSSYDSFSYFV 494


>gb|AFN88207.1| integrase core domain containing protein [Phaseolus vulgaris]
          Length = 1387

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
 Frame = -3

Query: 324 DRVTGKMIGEGIYSHGLYMLEQKSQA-MTAQGPNIWHKRMGHPS-D*VLXXXXXXXXXXX 151
           DR +G+MIG G  SHGLY L+  +        P++ H R+GHPS   +            
Sbjct: 448 DRCSGRMIGTGCESHGLYQLQISAHVGAIMDSPSLIHARLGHPSLAKMQQLVPSLSNVSS 507

Query: 150 STCEVCQFSKQTRLPFGTSLSV-SRTPFELIHSDVWGPAPIESYDGYRYFV 1
            +CE CQF K  R  F +S+S  + +PF L+HSD+WGP+ I+S  G++YFV
Sbjct: 508 LSCESCQFGKHIRSSFPSSVSQRASSPFALVHSDIWGPSRIKSNLGFQYFV 558


>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1402

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 43/119 (36%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
 Frame = -3

Query: 324 DRVTGKMIGEGIYSHGLYMLEQKSQ-------AMTAQGPNIWHKRMGHPSD*VLXXXXXX 166
           D+ T K++  G    GLY L+  SQ          +    +WH+R+GHP   VL      
Sbjct: 426 DKATKKLLIMGSTCDGLYCLKDDSQFKAFFSTRQQSASDEVWHRRLGHPHPQVLQQLVKT 485

Query: 165 XXXXXST-----CEVCQFSKQTRLPFGTSLSVSRTPFELIHSDVWGPAPIESYDGYRYF 4
                +      CE CQ  K TRLPF +S   S  P E +H D+WGP+PI S  G+RY+
Sbjct: 486 NSISINKTSKSLCEACQLGKSTRLPFVSSSFTSNRPLERVHCDLWGPSPITSVQGFRYY 544