BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029233
         (389 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004134127.1| PREDICTED: protein RDM1-like isoform 1 [Cucu...   129   2e-28
ref|XP_002311634.1| predicted protein [Populus trichocarpa] gi|2...   115   5e-24
ref|XP_002279112.2| PREDICTED: protein RDM1 [Vitis vinifera]          114   8e-24
emb|CBI26288.3| unnamed protein product [Vitis vinifera]              114   8e-24
dbj|BAD38576.1| unknown protein [Oryza sativa Japonica Group] gi...   111   7e-23

>ref|XP_004134127.1| PREDICTED: protein RDM1-like isoform 1 [Cucumis sativus]
           gi|449432682|ref|XP_004134128.1| PREDICTED: protein
           RDM1-like isoform 2 [Cucumis sativus]
           gi|449504162|ref|XP_004162269.1| PREDICTED: protein
           RDM1-like isoform 1 [Cucumis sativus]
           gi|449504166|ref|XP_004162270.1| PREDICTED: protein
           RDM1-like isoform 2 [Cucumis sativus]
          Length = 174

 Score =  129 bits (325), Expect = 2e-28
 Identities = 59/84 (70%), Positives = 72/84 (85%)
 Frame = +3

Query: 135 FCLPAKQITAEGTVLKRAEMYQEYMKLIQIPSLHGSAIPFTTWQGLAKSLKQLYGQPLHY 314
           F +PAK++T+EG ++KRAEMYQEYMK IQIP+  GS IPFTTW GL KS+KQLYGQPLHY
Sbjct: 42  FKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHY 101

Query: 315 LTNVALKQLDQSRIGSENEHQPLD 386
           LTN+ LKQ DQ R+GS +E++PLD
Sbjct: 102 LTNILLKQWDQLRLGSADEYKPLD 125


>ref|XP_002311634.1| predicted protein [Populus trichocarpa] gi|222851454|gb|EEE89001.1|
           predicted protein [Populus trichocarpa]
          Length = 175

 Score =  115 bits (287), Expect = 5e-24
 Identities = 52/81 (64%), Positives = 65/81 (80%)
 Frame = +3

Query: 144 PAKQITAEGTVLKRAEMYQEYMKLIQIPSLHGSAIPFTTWQGLAKSLKQLYGQPLHYLTN 323
           P K+ T+EG +++RAEMYQ+YM+ I IP   GSAIPF++W GL KS+KQLY QPLHYLTN
Sbjct: 46  PIKETTSEGVLIRRAEMYQDYMRHIPIPVQRGSAIPFSSWAGLGKSIKQLYQQPLHYLTN 105

Query: 324 VALKQLDQSRIGSENEHQPLD 386
           + L + DQ RIGSE+EH PLD
Sbjct: 106 ILLNKWDQQRIGSEDEHTPLD 126


>ref|XP_002279112.2| PREDICTED: protein RDM1 [Vitis vinifera]
          Length = 137

 Score =  114 bits (285), Expect = 8e-24
 Identities = 54/82 (65%), Positives = 66/82 (80%)
 Frame = +3

Query: 144 PAKQITAEGTVLKRAEMYQEYMKLIQIPSLHGSAIPFTTWQGLAKSLKQLYGQPLHYLTN 323
           PA+Q   E  V++RAEMYQEYMK I IP+  GS IPF TW GLAKS+KQLYGQPLHYLTN
Sbjct: 8   PARQEPFEDVVIRRAEMYQEYMKQIPIPARRGSLIPFDTWMGLAKSIKQLYGQPLHYLTN 67

Query: 324 VALKQLDQSRIGSENEHQPLDA 389
           + +KQ DQ RIGS++E++ LD+
Sbjct: 68  ILVKQWDQLRIGSKDENRSLDS 89


>emb|CBI26288.3| unnamed protein product [Vitis vinifera]
          Length = 174

 Score =  114 bits (285), Expect = 8e-24
 Identities = 54/82 (65%), Positives = 66/82 (80%)
 Frame = +3

Query: 144 PAKQITAEGTVLKRAEMYQEYMKLIQIPSLHGSAIPFTTWQGLAKSLKQLYGQPLHYLTN 323
           PA+Q   E  V++RAEMYQEYMK I IP+  GS IPF TW GLAKS+KQLYGQPLHYLTN
Sbjct: 45  PARQEPFEDVVIRRAEMYQEYMKQIPIPARRGSLIPFDTWMGLAKSIKQLYGQPLHYLTN 104

Query: 324 VALKQLDQSRIGSENEHQPLDA 389
           + +KQ DQ RIGS++E++ LD+
Sbjct: 105 ILVKQWDQLRIGSKDENRSLDS 126


>dbj|BAD38576.1| unknown protein [Oryza sativa Japonica Group]
           gi|51535714|dbj|BAD37732.1| unknown protein [Oryza
           sativa Japonica Group] gi|215701196|dbj|BAG92620.1|
           unnamed protein product [Oryza sativa Japonica Group]
          Length = 173

 Score =  111 bits (277), Expect = 7e-23
 Identities = 53/88 (60%), Positives = 67/88 (76%), Gaps = 2/88 (2%)
 Frame = +3

Query: 132 SFCLP--AKQITAEGTVLKRAEMYQEYMKLIQIPSLHGSAIPFTTWQGLAKSLKQLYGQP 305
           +F LP   K    +G ++++AEMYQEYMK I +P+  GS IP TTW GL +S+KQLY QP
Sbjct: 35  AFGLPNSTKAAAPDGALIRKAEMYQEYMKHIPVPAHRGSVIPCTTWLGLGRSVKQLYKQP 94

Query: 306 LHYLTNVALKQLDQSRIGSENEHQPLDA 389
           LHYLTNV LKQ DQ R+GS++EH+PLDA
Sbjct: 95  LHYLTNVLLKQWDQQRVGSDDEHRPLDA 122