BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029173
         (453 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop...    96   2e-18
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ...    96   2e-18
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    93   3e-17
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    91   1e-16
ref|XP_002865536.1| hypothetical protein ARALYDRAFT_917542 [Arab...    90   2e-16

>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
          Length = 278

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 49/131 (37%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
 Frame = +3

Query: 51  RRHLPDIVMKMEGEIRPVRRV-----DRILWTASQ---KGDFNLKETYNSIRDTRAAITW 206
           +RH  D + ++E  I  VR+      DR LW   +   KG F+  +T+  IR       W
Sbjct: 52  KRHRADFLNQIENHIELVRQARSQESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEW 111

Query: 207 KRIVWFPNRIPRHSFIAWLTFKEGLKTMVRMKEWNQVQDDTCVICGNGSETETHLFYECT 386
            R VWFP+  P++SF+ WL F   L T  R+ +WN     TCV C    ET  HLF+ C 
Sbjct: 112 YRGVWFPSSTPKYSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCP 171

Query: 387 YSQFIWMYILK 419
           YS  IW+ + K
Sbjct: 172 YSSQIWIALAK 182


>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 637

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 49/131 (37%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
 Frame = +3

Query: 51  RRHLPDIVMKMEGEIRPVRRV-----DRILWTASQ---KGDFNLKETYNSIRDTRAAITW 206
           +RH  D + ++E  I  VR+      DR LW   +   KG F+  +T+  IR       W
Sbjct: 220 KRHRADFLNQIENHIELVRQARSQESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEW 279

Query: 207 KRIVWFPNRIPRHSFIAWLTFKEGLKTMVRMKEWNQVQDDTCVICGNGSETETHLFYECT 386
            R VWFP+  P++SF+ WL F   L T  R+ +WN     TCV C    ET  HLF+ C 
Sbjct: 280 YRGVWFPSSTPKYSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCP 339

Query: 387 YSQFIWMYILK 419
           YS  IW+ + K
Sbjct: 340 YSSQIWIALAK 350


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
 Frame = +3

Query: 51   RRHLPDIVMKMEGEIRPVRRVDR------ILWTASQKGDFN----LKETYNSIRDTRAAI 200
            R+H   I  ++  EI+ +++ +R       LW  S K DFN     K T+N++R  +   
Sbjct: 1294 RQHRAAIYNRINAEIQRLQQQEREAGPDISLWR-SLKNDFNKRFITKVTWNNVRTHQPQQ 1352

Query: 201  TWKRIVWFPNRIPRHSFIAWLTFKEGLKTMVRMKEWNQVQDDTCVICGNGSETETHLFYE 380
             W + VWFP   P++SF+ WLT +  L T  R+K WN  Q  TC +C N  ET  HLF+ 
Sbjct: 1353 NWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFS 1412

Query: 381  CTYSQFIW 404
            C Y+ ++W
Sbjct: 1413 CQYTSYVW 1420


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
 Frame = +3

Query: 51   RRHLPDIVMKMEGEI------RPVRRVDRILWTASQ---KGDFNLKETYNSIRDTRAAIT 203
            +RH  +I+ + E  +      R +   D ILW   +   K  F+ K+T+N IR +     
Sbjct: 718  KRHRVEILNEFEEILLQKYQHRNIELEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRA 777

Query: 204  WKRIVWFPNRIPRHSFIAWLTFKEGLKTMVRMKEWNQVQDDTCVICGNGSETETHLFYEC 383
            W + VWF +  P+ SF AWL  +  L T  RM  WN     TCV C +  ET  HLF++C
Sbjct: 778  WHKGVWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQC 837

Query: 384  TYSQFIWMYILK 419
             YS  IW  I K
Sbjct: 838  CYSSEIWTSIAK 849


>ref|XP_002865536.1| hypothetical protein ARALYDRAFT_917542 [Arabidopsis lyrata subsp.
           lyrata] gi|297311371|gb|EFH41795.1| hypothetical protein
           ARALYDRAFT_917542 [Arabidopsis lyrata subsp. lyrata]
          Length = 227

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 10/144 (6%)
 Frame = +3

Query: 3   VANLLENGKWITPWHIRR----HLPDIVMKMEGEIRPVRRV---DRILWTAS---QKGDF 152
           VAN ++     T W +RR     L ++V K++ EI P +R    D+ LW  +       F
Sbjct: 9   VANAVQG----TQWRVRRCRSQTLRNVVTKLQ-EIAPPQRAKGPDKPLWRYTLDDYDSSF 63

Query: 153 NLKETYNSIRDTRAAITWKRIVWFPNRIPRHSFIAWLTFKEGLKTMVRMKEWNQVQDDTC 332
             + T+N +R  +  + W   VWFP R+PR+SFI WL  K+ L T  RM+ W   Q   C
Sbjct: 64  TSRHTWNLLRKAKHKVLWHNSVWFPQRVPRYSFIVWLAVKDQLSTGTRMRAWGVEQ--PC 121

Query: 333 VICGNGSETETHLFYECTYSQFIW 404
           V C    E+  HLF+ C ++  IW
Sbjct: 122 VFCRERDESRDHLFFACPFTYSIW 145