BLASTX nr result
ID: Coptis23_contig00029141
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00029141
(390 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containi... 160 1e-37
ref|XP_003623854.1| Pentatricopeptide repeat-containing protein ... 144 1e-32
gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula] 144 1e-32
ref|XP_002512769.1| pentatricopeptide repeat-containing protein,... 141 6e-32
ref|XP_003622422.1| Pentatricopeptide repeat-containing protein ... 139 2e-31
>ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera] gi|297736133|emb|CBI24171.3| unnamed
protein product [Vitis vinifera]
Length = 687
Score = 160 bits (404), Expect = 1e-37
Identities = 76/122 (62%), Positives = 97/122 (79%)
Frame = +2
Query: 20 IHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSACYVKCGL 199
+H ++ GF + + NALIDMYGKCR EGA+ VFE +P +DVI+WTS+++CYV CGL
Sbjct: 100 VHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGL 159
Query: 200 LIEALLVFREMGMNGLRPNPITVSSVLPACSGLRYLSSGKEIHGFVVRNGIGHNVFVSSG 379
L EAL FR+MG+NG RPN +TVSS+LPAC+ L+ L SG+E+HGFVVRNG+G NVFVSS
Sbjct: 160 LREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSA 219
Query: 380 LV 385
LV
Sbjct: 220 LV 221
Score = 86.7 bits (213), Expect = 2e-15
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 35/163 (21%)
Frame = +2
Query: 2 INEGCEIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSAC 181
+ G E+HG VV+ G G + VS+AL++MY C + AQ VF+ + R+D ++W L
Sbjct: 195 LKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITA 254
Query: 182 Y-----------------------------------VKCGLLIEALLVFREMGMNGLRPN 256
Y ++ G +AL V M +G +PN
Sbjct: 255 YFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPN 314
Query: 257 PITVSSVLPACSGLRYLSSGKEIHGFVVRNGIGHNVFVSSGLV 385
IT++SVLPAC+ L L GK+IHG++ R+ ++ ++ LV
Sbjct: 315 QITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALV 357
Score = 71.2 bits (173), Expect = 8e-11
Identities = 37/102 (36%), Positives = 59/102 (57%)
Frame = +2
Query: 11 GCEIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSACYVK 190
G +IHG + + F L + AL+ MY KC +E +++VF + ++D ++W ++
Sbjct: 334 GKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSM 393
Query: 191 CGLLIEALLVFREMGMNGLRPNPITVSSVLPACSGLRYLSSG 316
G EALL+FREM +G+RPN +T + VL CS R + G
Sbjct: 394 HGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEG 435
>ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 865
Score = 144 bits (362), Expect = 1e-32
Identities = 69/123 (56%), Positives = 93/123 (75%)
Frame = +2
Query: 17 EIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSACYVKCG 196
E+H + G + V NALI YGKC+ VEGA++VF++L +DV++WTSLS+CYVKCG
Sbjct: 185 EVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCG 244
Query: 197 LLIEALLVFREMGMNGLRPNPITVSSVLPACSGLRYLSSGKEIHGFVVRNGIGHNVFVSS 376
+ + VFREMG +G++PNP+TVSS+LPAC+ L+ L SGKEIHGF VR+G+ N+FV S
Sbjct: 245 FPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCS 304
Query: 377 GLV 385
LV
Sbjct: 305 ALV 307
Score = 81.6 bits (200), Expect = 6e-14
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 35/150 (23%)
Frame = +2
Query: 2 INEGCEIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSAC 181
+ G EIHG V+ G + L V +AL+ +Y KC V A+ VF+ +P +DV++W +
Sbjct: 281 LKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTA 340
Query: 182 YVK--------------------------------C---GLLIEALLVFREMGMNGLRPN 256
Y K C G EA+ +FR+M G +PN
Sbjct: 341 YFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPN 400
Query: 257 PITVSSVLPACSGLRYLSSGKEIHGFVVRN 346
IT+SS+LPACS L GKEIH +V R+
Sbjct: 401 EITISSILPACSFSENLRMGKEIHCYVFRH 430
Score = 58.9 bits (141), Expect = 4e-07
Identities = 36/112 (32%), Positives = 59/112 (52%)
Frame = +2
Query: 11 GCEIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSACYVK 190
G EIH V + L + AL+ MY KC + ++ VF+ + RKDV+ W ++
Sbjct: 420 GKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAM 479
Query: 191 CGLLIEALLVFREMGMNGLRPNPITVSSVLPACSGLRYLSSGKEIHGFVVRN 346
G EAL +F +M ++ ++PN +T + VL CS R + G +I + R+
Sbjct: 480 HGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRD 531
>gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 144 bits (362), Expect = 1e-32
Identities = 69/123 (56%), Positives = 93/123 (75%)
Frame = +2
Query: 17 EIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSACYVKCG 196
E+H + G + V NALI YGKC+ VEGA++VF++L +DV++WTSLS+CYVKCG
Sbjct: 99 EVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCG 158
Query: 197 LLIEALLVFREMGMNGLRPNPITVSSVLPACSGLRYLSSGKEIHGFVVRNGIGHNVFVSS 376
+ + VFREMG +G++PNP+TVSS+LPAC+ L+ L SGKEIHGF VR+G+ N+FV S
Sbjct: 159 FPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCS 218
Query: 377 GLV 385
LV
Sbjct: 219 ALV 221
Score = 81.6 bits (200), Expect = 6e-14
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 35/150 (23%)
Frame = +2
Query: 2 INEGCEIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSAC 181
+ G EIHG V+ G + L V +AL+ +Y KC V A+ VF+ +P +DV++W +
Sbjct: 195 LKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTA 254
Query: 182 YVK--------------------------------C---GLLIEALLVFREMGMNGLRPN 256
Y K C G EA+ +FR+M G +PN
Sbjct: 255 YFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPN 314
Query: 257 PITVSSVLPACSGLRYLSSGKEIHGFVVRN 346
IT+SS+LPACS L GKEIH +V R+
Sbjct: 315 EITISSILPACSFSENLRMGKEIHCYVFRH 344
Score = 58.9 bits (141), Expect = 4e-07
Identities = 36/112 (32%), Positives = 59/112 (52%)
Frame = +2
Query: 11 GCEIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSACYVK 190
G EIH V + L + AL+ MY KC + ++ VF+ + RKDV+ W ++
Sbjct: 334 GKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAM 393
Query: 191 CGLLIEALLVFREMGMNGLRPNPITVSSVLPACSGLRYLSSGKEIHGFVVRN 346
G EAL +F +M ++ ++PN +T + VL CS R + G +I + R+
Sbjct: 394 HGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRD 445
>ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223547780|gb|EEF49272.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 684
Score = 141 bits (355), Expect = 6e-32
Identities = 63/123 (51%), Positives = 94/123 (76%)
Frame = +2
Query: 17 EIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSACYVKCG 196
+IH ++ GF L + NALIDM+GKC++V GA+ VF+++ KDV++WTS++ CYV CG
Sbjct: 98 KIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCG 157
Query: 197 LLIEALLVFREMGMNGLRPNPITVSSVLPACSGLRYLSSGKEIHGFVVRNGIGHNVFVSS 376
+ + +L+FREMG+NG+R N +TVSS+LPAC+ Y+ G+E+HGF++RN + NV+VSS
Sbjct: 158 MCRQGILLFREMGLNGIRANSLTVSSILPACAD--YIKLGREVHGFILRNEMEGNVYVSS 215
Query: 377 GLV 385
LV
Sbjct: 216 ALV 218
Score = 65.1 bits (157), Expect = 6e-09
Identities = 35/102 (34%), Positives = 56/102 (54%)
Frame = +2
Query: 11 GCEIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSACYVK 190
G EIHG V + F + ++ AL+ +Y KC +E ++ VF +PRKDV+ W ++
Sbjct: 331 GKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSM 390
Query: 191 CGLLIEALLVFREMGMNGLRPNPITVSSVLPACSGLRYLSSG 316
G E+L++F +M +G+ PN +T VL CS + G
Sbjct: 391 HGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEG 432
>ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497437|gb|AES78640.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 952
Score = 139 bits (351), Expect = 2e-31
Identities = 66/123 (53%), Positives = 88/123 (71%)
Frame = +2
Query: 17 EIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSACYVKCG 196
+ H + G + + NA I YGKC+ VEGA++VF++L +DV+TW SLSACYV CG
Sbjct: 61 QFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCG 120
Query: 197 LLIEALLVFREMGMNGLRPNPITVSSVLPACSGLRYLSSGKEIHGFVVRNGIGHNVFVSS 376
+ L VFR+MG+N ++ NP+TVSS+LP CS L+ L SGKEIHGFVVR+G+ +VFVSS
Sbjct: 121 FPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSS 180
Query: 377 GLV 385
V
Sbjct: 181 AFV 183
Score = 133 bits (335), Expect = 1e-29
Identities = 65/128 (50%), Positives = 90/128 (70%)
Frame = +2
Query: 2 INEGCEIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSAC 181
+ G EIHG VV+ G + VS+A ++ Y KC V AQ VF+ +P +DV+TW SLS+C
Sbjct: 157 LKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSC 216
Query: 182 YVKCGLLIEALLVFREMGMNGLRPNPITVSSVLPACSGLRYLSSGKEIHGFVVRNGIGHN 361
YV CG + L VFREM ++G++P+P+TVS +L ACS L+ L SGK IHGF +++G+ N
Sbjct: 217 YVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVEN 276
Query: 362 VFVSSGLV 385
VFVS+ LV
Sbjct: 277 VFVSNALV 284
Score = 132 bits (333), Expect = 2e-29
Identities = 64/128 (50%), Positives = 90/128 (70%)
Frame = +2
Query: 2 INEGCEIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSAC 181
+ G IHG +K G + VSNAL+++Y C V AQ VF+ +P ++VITW SL++C
Sbjct: 258 LKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASC 317
Query: 182 YVKCGLLIEALLVFREMGMNGLRPNPITVSSVLPACSGLRYLSSGKEIHGFVVRNGIGHN 361
YV CG + L VFREMG+NG++P+P+ +SS+LPACS L+ L SGK IHGF V++G+ +
Sbjct: 318 YVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVED 377
Query: 362 VFVSSGLV 385
VFV + LV
Sbjct: 378 VFVCTALV 385
Score = 120 bits (300), Expect = 1e-25
Identities = 60/128 (46%), Positives = 85/128 (66%)
Frame = +2
Query: 2 INEGCEIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSAC 181
+ G IHG VK G + V AL+++Y C V AQ VF+ +P ++V+TW SLS+C
Sbjct: 359 LKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSC 418
Query: 182 YVKCGLLIEALLVFREMGMNGLRPNPITVSSVLPACSGLRYLSSGKEIHGFVVRNGIGHN 361
YV CG + L VFREM +NG++P+ +T+ S+L ACS L+ L SGK IHGF VR+G+ +
Sbjct: 419 YVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVED 478
Query: 362 VFVSSGLV 385
VFV + L+
Sbjct: 479 VFVCNALL 486
Score = 67.4 bits (163), Expect = 1e-09
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 35/150 (23%)
Frame = +2
Query: 2 INEGCEIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSAC 181
+ G IHG V+ G + V NAL+ +Y KC V AQ VF+ +P ++V +W +
Sbjct: 460 LKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTA 519
Query: 182 Y-----------------------------------VKCGLLIEALLVFREMGMNGLRPN 256
Y VK + EA+ +FR+M G +P+
Sbjct: 520 YFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPD 579
Query: 257 PITVSSVLPACSGLRYLSSGKEIHGFVVRN 346
T+ S+L ACS L GKEIH +V R+
Sbjct: 580 ETTIYSILRACSLSECLRMGKEIHCYVFRH 609
Score = 60.1 bits (144), Expect = 2e-07
Identities = 37/112 (33%), Positives = 60/112 (53%)
Frame = +2
Query: 11 GCEIHGRVVKTGFGLYLPVSNALIDMYGKCRYVEGAQKVFEELPRKDVITWTSLSACYVK 190
G EIH V + L +NAL+DMY KC + ++ VF+ +P KDV +W ++
Sbjct: 599 GKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGM 658
Query: 191 CGLLIEALLVFREMGMNGLRPNPITVSSVLPACSGLRYLSSGKEIHGFVVRN 346
G EAL +F +M ++ ++P+ T + VL ACS + G +I + R+
Sbjct: 659 HGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRD 710