BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029110
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18
ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containi...    81   1e-13
ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containi...    80   1e-13
ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containi...    68   7e-10
ref|XP_003591206.1| Pentatricopeptide repeat-containing protein ...    68   7e-10

>ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 468

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 46/79 (58%), Positives = 58/79 (73%)
 Frame = -2

Query: 237 QLNEIATKLLHLLNTCKSPFQLNQIQAQIIHHNLHPNSTITHHFIKKCQSLNRLNTALLL 58
           +LN   TK L+LL  C SP  ++QIQAQ+I  NLH N+TI HHFI  CQSL  L++ALLL
Sbjct: 6   RLNPRVTKFLNLLTNCCSPCHIHQIQAQLIVQNLHSNTTIAHHFITACQSLGLLDSALLL 65

Query: 57  FHQIHRPHIFICNSIIKAF 1
           F    +PH+FICNS+I+AF
Sbjct: 66  FTHHSKPHVFICNSLIRAF 84


>ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 464

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 37/80 (46%), Positives = 51/80 (63%)
 Frame = -2

Query: 240 SQLNEIATKLLHLLNTCKSPFQLNQIQAQIIHHNLHPNSTITHHFIKKCQSLNRLNTALL 61
           +Q    +T++L +  T  SP  + QIQAQ+I  NLH +  I HHFI  C  L+ L +A L
Sbjct: 6   TQFRAESTRILSIFTTSLSPLHIPQIQAQLILQNLHSHPLIAHHFINTCHHLHLLGSAFL 65

Query: 60  LFHQIHRPHIFICNSIIKAF 1
            F  I +PH+FICNS+I+AF
Sbjct: 66  FFTHIPKPHVFICNSLIRAF 85


>ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 464

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 37/80 (46%), Positives = 51/80 (63%)
 Frame = -2

Query: 240 SQLNEIATKLLHLLNTCKSPFQLNQIQAQIIHHNLHPNSTITHHFIKKCQSLNRLNTALL 61
           +Q    +T++L +  T  SP  + QIQAQ+I  NLH +  I HHFI  C  L+ L +A L
Sbjct: 6   TQFRAESTRILTIFTTSLSPLHIPQIQAQLILQNLHSHPLIAHHFINTCHHLHLLGSAFL 65

Query: 60  LFHQIHRPHIFICNSIIKAF 1
            F  I +PH+FICNS+I+AF
Sbjct: 66  FFTHIPKPHVFICNSLIRAF 85


>ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09190-like [Cucumis sativus]
           gi|449490933|ref|XP_004158752.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g09190-like [Cucumis sativus]
          Length = 484

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 39/85 (45%), Positives = 50/85 (58%)
 Frame = -2

Query: 258 MSQNVVSQLNEIATKLLHLLNTCKSPFQLNQIQAQIIHHNLHPNSTITHHFIKKCQSLNR 79
           MS+N +    EI  ++L LL+  KS   L QI A  + H LH ++ I  HFI  C S NR
Sbjct: 1   MSKNCM----EIERRILRLLHGHKSRTHLTQIHAHFLRHGLHQSNQILAHFISVCASFNR 56

Query: 78  LNTALLLFHQIHRPHIFICNSIIKA 4
           +  A  LF Q H P+IF+ NSIIKA
Sbjct: 57  IAYADRLFSQSHNPNIFLFNSIIKA 81


>ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355480254|gb|AES61457.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 490

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 32/77 (41%), Positives = 48/77 (62%)
 Frame = -2

Query: 234 LNEIATKLLHLLNTCKSPFQLNQIQAQIIHHNLHPNSTITHHFIKKCQSLNRLNTALLLF 55
           L +I +K+LHLL+  K+   L QI A  + H LH ++ I  HF+  C SL+++  A  +F
Sbjct: 5   LQKIESKILHLLHNTKTQTHLPQIHAHFLRHGLHHSNQILSHFVSVCTSLHQIPYATTIF 64

Query: 54  HQIHRPHIFICNSIIKA 4
           +  H P+I + NSIIKA
Sbjct: 65  NHTHHPNILLFNSIIKA 81