BLASTX nr result

ID: Coptis23_contig00029092 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029092
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267581.2| PREDICTED: DEAD-box ATP-dependent RNA helica...   196   2e-48
emb|CBI32154.3| unnamed protein product [Vitis vinifera]              196   2e-48
emb|CBI16497.3| unnamed protein product [Vitis vinifera]              194   5e-48
ref|XP_002283489.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   194   5e-48
ref|NP_001059135.1| Os07g0202100 [Oryza sativa Japonica Group] g...   192   2e-47

>ref|XP_002267581.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Vitis
           vinifera]
          Length = 617

 Score =  196 bits (498), Expect = 2e-48
 Identities = 96/122 (78%), Positives = 109/122 (89%)
 Frame = -2

Query: 368 LAVGRVGSSTDLIEQRIELVEDMDKRSHLMALLQAQREKGIHGKQALTVVFVETKRGADA 189
           LAVGRVGSSTDLI QR+E V++ DKRSHLM LL AQRE G HGKQALT+VFVETK+GADA
Sbjct: 369 LAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHAQRENGTHGKQALTLVFVETKKGADA 428

Query: 188 LEHWLSRSGYPATAIHGDKIQMERERALRSFKTGATPIMVATDVAARGLDIPNVAHVINF 9
           LEHWL  +G+PAT+IHGD+ Q ERE ALR FK+GATPI+VATDVAARGLDIP+VAHV+NF
Sbjct: 429 LEHWLCINGFPATSIHGDRSQQEREHALRLFKSGATPILVATDVAARGLDIPHVAHVVNF 488

Query: 8   DL 3
           DL
Sbjct: 489 DL 490


>emb|CBI32154.3| unnamed protein product [Vitis vinifera]
          Length = 401

 Score =  196 bits (498), Expect = 2e-48
 Identities = 96/122 (78%), Positives = 109/122 (89%)
 Frame = -2

Query: 368 LAVGRVGSSTDLIEQRIELVEDMDKRSHLMALLQAQREKGIHGKQALTVVFVETKRGADA 189
           LAVGRVGSSTDLI QR+E V++ DKRSHLM LL AQRE G HGKQALT+VFVETK+GADA
Sbjct: 153 LAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHAQRENGTHGKQALTLVFVETKKGADA 212

Query: 188 LEHWLSRSGYPATAIHGDKIQMERERALRSFKTGATPIMVATDVAARGLDIPNVAHVINF 9
           LEHWL  +G+PAT+IHGD+ Q ERE ALR FK+GATPI+VATDVAARGLDIP+VAHV+NF
Sbjct: 213 LEHWLCINGFPATSIHGDRSQQEREHALRLFKSGATPILVATDVAARGLDIPHVAHVVNF 272

Query: 8   DL 3
           DL
Sbjct: 273 DL 274


>emb|CBI16497.3| unnamed protein product [Vitis vinifera]
          Length = 268

 Score =  194 bits (494), Expect = 5e-48
 Identities = 94/122 (77%), Positives = 107/122 (87%)
 Frame = -2

Query: 368 LAVGRVGSSTDLIEQRIELVEDMDKRSHLMALLQAQREKGIHGKQALTVVFVETKRGADA 189
           LAVGRVGSSTDLI QR+E V D DKRSHLM LL AQR  G+HGKQ LT+VFVETK+GAD+
Sbjct: 25  LAVGRVGSSTDLIVQRVEFVHDTDKRSHLMDLLHAQRANGVHGKQYLTLVFVETKKGADS 84

Query: 188 LEHWLSRSGYPATAIHGDKIQMERERALRSFKTGATPIMVATDVAARGLDIPNVAHVINF 9
           LEHWL  +G+PAT IHGD+ Q ERE+ALRSFK+G TPI+VATDVAARGLDIP+VAHV+NF
Sbjct: 85  LEHWLCMNGFPATTIHGDRTQQEREQALRSFKSGVTPILVATDVAARGLDIPHVAHVVNF 144

Query: 8   DL 3
           DL
Sbjct: 145 DL 146


>ref|XP_002283489.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 37 [Vitis vinifera]
           gi|147854540|emb|CAN78578.1| hypothetical protein
           VITISV_013679 [Vitis vinifera]
          Length = 612

 Score =  194 bits (494), Expect = 5e-48
 Identities = 94/122 (77%), Positives = 107/122 (87%)
 Frame = -2

Query: 368 LAVGRVGSSTDLIEQRIELVEDMDKRSHLMALLQAQREKGIHGKQALTVVFVETKRGADA 189
           LAVGRVGSSTDLI QR+E V D DKRSHLM LL AQR  G+HGKQ LT+VFVETK+GAD+
Sbjct: 369 LAVGRVGSSTDLIVQRVEFVHDTDKRSHLMDLLHAQRANGVHGKQYLTLVFVETKKGADS 428

Query: 188 LEHWLSRSGYPATAIHGDKIQMERERALRSFKTGATPIMVATDVAARGLDIPNVAHVINF 9
           LEHWL  +G+PAT IHGD+ Q ERE+ALRSFK+G TPI+VATDVAARGLDIP+VAHV+NF
Sbjct: 429 LEHWLCMNGFPATTIHGDRTQQEREQALRSFKSGVTPILVATDVAARGLDIPHVAHVVNF 488

Query: 8   DL 3
           DL
Sbjct: 489 DL 490


>ref|NP_001059135.1| Os07g0202100 [Oryza sativa Japonica Group]
           gi|75325411|sp|Q6Z4K6.1|RH52B_ORYSJ RecName:
           Full=DEAD-box ATP-dependent RNA helicase 52B; AltName:
           Full=OsPL10b gi|34393986|dbj|BAC83834.1| putative
           DEAD-box RNA helicase DEAD3 [Oryza sativa Japonica
           Group] gi|113610671|dbj|BAF21049.1| Os07g0202100 [Oryza
           sativa Japonica Group] gi|222636630|gb|EEE66762.1|
           hypothetical protein OsJ_23477 [Oryza sativa Japonica
           Group]
          Length = 638

 Score =  192 bits (489), Expect = 2e-47
 Identities = 97/122 (79%), Positives = 108/122 (88%)
 Frame = -2

Query: 368 LAVGRVGSSTDLIEQRIELVEDMDKRSHLMALLQAQREKGIHGKQALTVVFVETKRGADA 189
           LAVGRVGSSTDLI QR+E V D DKRS+LM LL AQR  G HGKQALT+VFVETKRGADA
Sbjct: 384 LAVGRVGSSTDLIVQRVEFVLDADKRSYLMDLLHAQRANGTHGKQALTLVFVETKRGADA 443

Query: 188 LEHWLSRSGYPATAIHGDKIQMERERALRSFKTGATPIMVATDVAARGLDIPNVAHVINF 9
           LE+WL  +G+PAT+IHGD+ Q ERE ALRSFK+GATPI+VATDVAARGLDIP+VAHVINF
Sbjct: 444 LENWLYNNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAHVINF 503

Query: 8   DL 3
           DL
Sbjct: 504 DL 505


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