BLASTX nr result
ID: Coptis23_contig00029054
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00029054
(314 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containi... 122 4e-26
ref|XP_002511573.1| pentatricopeptide repeat-containing protein,... 97 1e-18
ref|NP_177599.1| pentatricopeptide repeat-containing protein [Ar... 93 2e-17
ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arab... 86 3e-15
gb|EAZ44717.1| hypothetical protein OsJ_29347 [Oryza sativa Japo... 81 1e-13
>ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
chloroplastic [Vitis vinifera]
gi|297733984|emb|CBI15231.3| unnamed protein product
[Vitis vinifera]
Length = 893
Score = 122 bits (305), Expect = 4e-26
Identities = 61/103 (59%), Positives = 79/103 (76%)
Frame = +1
Query: 4 EVNNYTLTSVLTACAKPQMMKEAIQIHSLILKCGFDSDSTVINSLINMYSKMGDVFSSEV 183
++NNYT+TSVLTAC +P M+KEA+Q+HS I K GF DS V ++LINMYSK+G V SE
Sbjct: 346 KINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSER 405
Query: 184 VFRESGTATDVESWAVMISGFAQNQSSGRAFETFRRMILEGIR 312
VFRE + ++ WAVMIS FAQ+ S+GRA E F+RM+ EG+R
Sbjct: 406 VFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLR 448
Score = 60.5 bits (145), Expect = 1e-07
Identities = 34/78 (43%), Positives = 48/78 (61%)
Frame = +1
Query: 79 IHSLILKCGFDSDSTVINSLINMYSKMGDVFSSEVVFRESGTATDVESWAVMISGFAQNQ 258
IH ILK G +D +V +SL MYSK G + S VF + +V SWA MI+GF+++
Sbjct: 470 IHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNV-SWASMITGFSEHD 528
Query: 259 SSGRAFETFRRMILEGIR 312
+ +A + FR M+LE IR
Sbjct: 529 HAEQAVQLFREMLLEEIR 546
Score = 57.0 bits (136), Expect = 2e-06
Identities = 31/95 (32%), Positives = 51/95 (53%)
Frame = +1
Query: 10 NNYTLTSVLTACAKPQMMKEAIQIHSLILKCGFDSDSTVINSLINMYSKMGDVFSSEVVF 189
N++T +S+LTACA + ++ + ++KCG D V ++I++Y+K D+ + F
Sbjct: 247 NSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEF 306
Query: 190 RESGTATDVESWAVMISGFAQNQSSGRAFETFRRM 294
+V SW +ISGF Q S AF F+ M
Sbjct: 307 LRM-PIRNVVSWTTIISGFVQKDDSISAFHFFKEM 340
Score = 56.2 bits (134), Expect = 3e-06
Identities = 31/102 (30%), Positives = 55/102 (53%)
Frame = +1
Query: 7 VNNYTLTSVLTACAKPQMMKEAIQIHSLILKCGFDSDSTVINSLINMYSKMGDVFSSEVV 186
++++T++SV+ A A + Q+H+ + K G +++ +V +SL+ MYSK G + V
Sbjct: 648 IDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKV 707
Query: 187 FRESGTATDVESWAVMISGFAQNQSSGRAFETFRRMILEGIR 312
F E D+ SW MI +AQ+ A + + M EG +
Sbjct: 708 F-EQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTK 748
>ref|XP_002511573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223550688|gb|EEF52175.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 954
Score = 97.4 bits (241), Expect = 1e-18
Identities = 48/103 (46%), Positives = 69/103 (66%)
Frame = +1
Query: 4 EVNNYTLTSVLTACAKPQMMKEAIQIHSLILKCGFDSDSTVINSLINMYSKMGDVFSSEV 183
E N +T+T+V++ACAKP +KEAIQIH ILK G+ D V +LINMY+K+ + SSE+
Sbjct: 349 ETNKFTVTTVISACAKPHFIKEAIQIHCWILKTGYYLDPVVGAALINMYAKLHAISSSEM 408
Query: 184 VFRESGTATDVESWAVMISGFAQNQSSGRAFETFRRMILEGIR 312
VFRE + W +MIS FA+NQ S A + +++ +G+R
Sbjct: 409 VFREMEGVKNPGIWTIMISSFAKNQDSQSAIDLLLKLLQQGLR 451
Score = 59.7 bits (143), Expect = 2e-07
Identities = 34/102 (33%), Positives = 57/102 (55%)
Frame = +1
Query: 7 VNNYTLTSVLTACAKPQMMKEAIQIHSLILKCGFDSDSTVINSLINMYSKMGDVFSSEVV 186
++++ ++SVL A A + Q+H+ ++K G DSD +V +SL+ +YSK G +
Sbjct: 651 IDSFAVSSVLGAIAGLNRLDFGTQLHAHLVKLGLDSDVSVGSSLVTVYSKCGSIEDCWKA 710
Query: 187 FRESGTATDVESWAVMISGFAQNQSSGRAFETFRRMILEGIR 312
F + A D+ SW MI+ AQ+ A + + +M EGIR
Sbjct: 711 FNQIDDA-DLISWTTMIASCAQHGKGVEALKIYEQMRREGIR 751
Score = 59.3 bits (142), Expect = 3e-07
Identities = 37/98 (37%), Positives = 55/98 (56%)
Frame = +1
Query: 10 NNYTLTSVLTACAKPQMMKEAIQIHSLILKCGFDSDSTVINSLINMYSKMGDVFSSEVVF 189
+ + L+SVL+ + +E IH ILK GF D +V +SL MYSK G + S VF
Sbjct: 453 DKFCLSSVLSVIDSLYLGRE---IHCYILKTGFVLDLSVGSSLFTMYSKCGSIGDSYKVF 509
Query: 190 RESGTATDVESWAVMISGFAQNQSSGRAFETFRRMILE 303
+ ++ SW MISGF ++ + +AFE R+M+ E
Sbjct: 510 EQIPVKDNI-SWTSMISGFTEHGHAYQAFELLRKMLTE 546
>ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g74600, chloroplastic; Flags: Precursor
gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical
protein; 84160-81473 [Arabidopsis thaliana]
gi|332197493|gb|AEE35614.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 895
Score = 93.2 bits (230), Expect = 2e-17
Identities = 47/104 (45%), Positives = 68/104 (65%)
Frame = +1
Query: 1 VEVNNYTLTSVLTACAKPQMMKEAIQIHSLILKCGFDSDSTVINSLINMYSKMGDVFSSE 180
VE+NN T+TSV++AC +P M+ EA Q+H+ + K GF DS+V +LI+MYSK GD+ SE
Sbjct: 347 VEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSE 406
Query: 181 VVFRESGTATDVESWAVMISGFAQNQSSGRAFETFRRMILEGIR 312
VF + VMI+ F+Q++ G+A F RM+ EG+R
Sbjct: 407 QVFEDLDDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQEGLR 450
Score = 57.0 bits (136), Expect = 2e-06
Identities = 30/100 (30%), Positives = 57/100 (57%)
Frame = +1
Query: 10 NNYTLTSVLTACAKPQMMKEAIQIHSLILKCGFDSDSTVINSLINMYSKMGDVFSSEVVF 189
++YT +SVL ACA + ++ + + ++KCG + D V +++++Y+K G + + VF
Sbjct: 250 DSYTYSSVLAACASLEKLRFGKVVQARVIKCGAE-DVFVCTAIVDLYAKCGHMAEAMEVF 308
Query: 190 RESGTATDVESWAVMISGFAQNQSSGRAFETFRRMILEGI 309
+ V SW VM+SG+ ++ + A E F+ M G+
Sbjct: 309 SRIPNPS-VVSWTVMLSGYTKSNDAFSALEIFKEMRHSGV 347
>ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
lyrata] gi|297334827|gb|EFH65245.1| hypothetical protein
ARALYDRAFT_476599 [Arabidopsis lyrata subsp. lyrata]
Length = 717
Score = 85.9 bits (211), Expect = 3e-15
Identities = 43/103 (41%), Positives = 66/103 (64%)
Frame = +1
Query: 1 VEVNNYTLTSVLTACAKPQMMKEAIQIHSLILKCGFDSDSTVINSLINMYSKMGDVFSSE 180
VE+N+ T+TSV++AC +P M+ EA Q+H+ + K GF D++V +LI+M SK GD+ SE
Sbjct: 169 VEINSCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSE 228
Query: 181 VVFRESGTATDVESWAVMISGFAQNQSSGRAFETFRRMILEGI 309
VF + VM++ F+QN+ G+A F RM+ EG+
Sbjct: 229 RVFEDLDDIRRQNIVNVMVTSFSQNKKPGKAIRLFTRMLQEGL 271
Score = 60.5 bits (145), Expect = 1e-07
Identities = 32/100 (32%), Positives = 57/100 (57%)
Frame = +1
Query: 10 NNYTLTSVLTACAKPQMMKEAIQIHSLILKCGFDSDSTVINSLINMYSKMGDVFSSEVVF 189
++YT +SVL ACA + ++ + + ++KCG + D V S++++Y+K G + + VF
Sbjct: 72 DSYTYSSVLAACASLEELRFGKVVQARVIKCGAE-DVFVCTSIVDLYAKCGHMAEAREVF 130
Query: 190 RESGTATDVESWAVMISGFAQNQSSGRAFETFRRMILEGI 309
+ V SW VM+SG+ ++ + A E FR M G+
Sbjct: 131 SRISNPS-VVSWTVMLSGYTKSNDAFSALEIFREMRHSGV 169
>gb|EAZ44717.1| hypothetical protein OsJ_29347 [Oryza sativa Japonica Group]
Length = 701
Score = 80.9 bits (198), Expect = 1e-13
Identities = 43/104 (41%), Positives = 62/104 (59%)
Frame = +1
Query: 1 VEVNNYTLTSVLTACAKPQMMKEAIQIHSLILKCGFDSDSTVINSLINMYSKMGDVFSSE 180
V +N YT TS+L ACA+ M++EA QIH ++LK D V +LI+ Y+ G + SE
Sbjct: 158 VAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSE 217
Query: 181 VVFRESGTATDVESWAVMISGFAQNQSSGRAFETFRRMILEGIR 312
VF E+GT ++ W+ ISG N S R+ + RRM +G+R
Sbjct: 218 KVFEEAGTVSNRSIWSAFISG-VSNHSLLRSVQLLRRMFHQGLR 260
Score = 61.6 bits (148), Expect = 6e-08
Identities = 33/104 (31%), Positives = 57/104 (54%)
Frame = +1
Query: 1 VEVNNYTLTSVLTACAKPQMMKEAIQIHSLILKCGFDSDSTVINSLINMYSKMGDVFSSE 180
+ +++Y +S+L+ CA +H +K G SD +V +SL+ +YS+ G++ S
Sbjct: 457 IRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRSGNMDDSR 516
Query: 181 VVFRESGTATDVESWAVMISGFAQNQSSGRAFETFRRMILEGIR 312
VF E + D+ +W +I G+AQ+ SS A F M+ G+R
Sbjct: 517 KVFDEI-SVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVR 559
Score = 55.8 bits (133), Expect = 3e-06
Identities = 32/102 (31%), Positives = 52/102 (50%)
Frame = +1
Query: 4 EVNNYTLTSVLTACAKPQMMKEAIQIHSLILKCGFDSDSTVINSLINMYSKMGDVFSSEV 183
E N++T + L+ACA + + +H L+L+ + D V SL+NMY+K GD+ ++
Sbjct: 58 EPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMR 117
Query: 184 VFRESGTATDVESWAVMISGFAQNQSSGRAFETFRRMILEGI 309
F +V SW I+GF Q+ A R M+ G+
Sbjct: 118 EFWRM-PVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGV 158
Score = 54.3 bits (129), Expect = 1e-05
Identities = 33/79 (41%), Positives = 44/79 (55%)
Frame = +1
Query: 76 QIHSLILKCGFDSDSTVINSLINMYSKMGDVFSSEVVFRESGTATDVESWAVMISGFAQN 255
Q+HS +K GF V ++L MYS+ +V S VF E V SW M++GFA +
Sbjct: 281 QLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGV-SWTAMVAGFATH 339
Query: 256 QSSGRAFETFRRMILEGIR 312
S AF TFR MIL+G +
Sbjct: 340 GHSVEAFLTFRNMILDGFK 358