BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029042
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containi...   106   2e-21
emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]   106   2e-21
ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containi...   100   9e-20
gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]    95   5e-18
ref|XP_003595043.1| Pentatricopeptide repeat-containing protein ...    95   5e-18

>ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Vitis vinifera]
          Length = 993

 Score =  106 bits (265), Expect = 2e-21
 Identities = 56/127 (44%), Positives = 77/127 (60%)
 Frame = +2

Query: 8   SSVATVGCYNIIIRALCWNGLVDMAINVFIELIGKALVPERATYVALLRSLFNARNEGGV 187
           +S+++V CY  +I  LC  G+VDMAI VFIEL  K L     TY +L+++ F  +   GV
Sbjct: 427 TSISSVSCYKCMIYGLCRKGMVDMAIEVFIELNEKGLELVSGTYTSLIKASFEEQGAEGV 486

Query: 188 LDFVQEFEKLGHEAFQSVCSDAIYILCREACFESAFDVYMAMRKKCLSMTRKCYYVILKG 367
           L FV   E LG EAF ++ + AI  LC+     +A +VYM MR+K   +T + YY ILKG
Sbjct: 487 LKFVHRIENLGREAFDTISNSAICFLCKRGFSLAACEVYMRMRRKQSVVTSRSYYSILKG 546

Query: 368 LMSTGSK 388
           L+S   K
Sbjct: 547 LISDDQK 553


>emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
          Length = 993

 Score =  106 bits (265), Expect = 2e-21
 Identities = 56/127 (44%), Positives = 77/127 (60%)
 Frame = +2

Query: 8   SSVATVGCYNIIIRALCWNGLVDMAINVFIELIGKALVPERATYVALLRSLFNARNEGGV 187
           +S+++V CY  +I  LC  G+VDMAI VFIEL  K L     TY +L+++ F  +   GV
Sbjct: 427 TSISSVSCYKCMIYGLCRKGMVDMAIEVFIELNEKGLELVSGTYTSLIKASFEEQGAEGV 486

Query: 188 LDFVQEFEKLGHEAFQSVCSDAIYILCREACFESAFDVYMAMRKKCLSMTRKCYYVILKG 367
           L FV   E LG EAF ++ + AI  LC+     +A +VYM MR+K   +T + YY ILKG
Sbjct: 487 LKFVHRIENLGREAFDTISNSAICFLCKRGFSLAACEVYMRMRRKQSVVTSRSYYSILKG 546

Query: 368 LMSTGSK 388
           L+S   K
Sbjct: 547 LISDDQK 553


>ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Glycine max]
          Length = 1064

 Score =  100 bits (250), Expect = 9e-20
 Identities = 50/134 (37%), Positives = 81/134 (60%)
 Frame = +2

Query: 14  VATVGCYNIIIRALCWNGLVDMAINVFIELIGKALVPERATYVALLRSLFNARNEGGVLD 193
           ++++ CYN II  LC NG+ +MAI   +EL  + L  +  T+  L +++F   N    LD
Sbjct: 501 ISSLACYNSIINGLCKNGMTEMAIEALLELNHEGLELDIGTFRMLTKTIFEENNTKKALD 560

Query: 194 FVQEFEKLGHEAFQSVCSDAIYILCREACFESAFDVYMAMRKKCLSMTRKCYYVILKGLM 373
            V   E LG + + SVC+D+I++LC+    + A  ++M M+KK LS+T   YY IL+G +
Sbjct: 561 LVYRMEGLGPDIYSSVCNDSIFLLCQRGLLDDANHMWMMMKKKGLSVTCNSYYSILRGHL 620

Query: 374 STGSKLLIPIMLNS 415
           + G++  I  +LNS
Sbjct: 621 NNGNREQIYPLLNS 634


>gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1053

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 47/136 (34%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
 Frame = +2

Query: 8   SSVATVGCYNIIIRALCWNGLVDMAINVFIELIGKALVPERATYVALLRSLFNARNEGGV 187
           +S+++  CYN II  LC  G+V+MAI   +EL  K L+ +  T+  L++++F   +   V
Sbjct: 485 TSISSYACYNSIINGLCKKGMVEMAIEALLELDHKGLMLDTGTHRLLMKTIFKENSSKVV 544

Query: 188 LDFVQEFEKLGHEAFQSVCSDAIYILCREACFESAFDVYMAMRKKCLSMTRKCYYVILKG 367
           LD V   E L  + + ++C+D+I++LC+    + A+ ++MAM+KK L +T K Y+ +L+ 
Sbjct: 545 LDLVCRMESLELDIYNAICNDSIFLLCKRGLLDDAYQLWMAMKKKGLPVTCKSYHSLLRR 604

Query: 368 LMS-TGSKLLIPIMLN 412
           L+   G++  I  +LN
Sbjct: 605 LLCVVGNREQILPLLN 620


>ref|XP_003595043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355484091|gb|AES65294.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1070

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 47/136 (34%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
 Frame = +2

Query: 8   SSVATVGCYNIIIRALCWNGLVDMAINVFIELIGKALVPERATYVALLRSLFNARNEGGV 187
           +S+++  CYN II  LC  G+V+MAI   +EL  K L+ +  T+  L++++F   +   V
Sbjct: 502 TSISSYACYNSIINGLCKKGMVEMAIEALLELDHKGLMLDTGTHRLLMKTIFKENSSKVV 561

Query: 188 LDFVQEFEKLGHEAFQSVCSDAIYILCREACFESAFDVYMAMRKKCLSMTRKCYYVILKG 367
           LD V   E L  + + ++C+D+I++LC+    + A+ ++MAM+KK L +T K Y+ +L+ 
Sbjct: 562 LDLVCRMESLELDIYNAICNDSIFLLCKRGLLDDAYQLWMAMKKKGLPVTCKSYHSLLRR 621

Query: 368 LMS-TGSKLLIPIMLN 412
           L+   G++  I  +LN
Sbjct: 622 LLCVVGNREQILPLLN 637