BLASTX nr result

ID: Coptis23_contig00029028 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029028
         (469 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004135658.1| PREDICTED: uncharacterized protein LOC101217...   152   2e-35
ref|XP_002274439.1| PREDICTED: protein translocase subunit SecA ...   150   1e-34
ref|XP_002512267.1| conserved hypothetical protein [Ricinus comm...   145   3e-33
gb|AFK33624.1| unknown [Lotus japonicus]                              144   7e-33
ref|XP_002319047.1| predicted protein [Populus trichocarpa] gi|2...   144   1e-32

>ref|XP_004135658.1| PREDICTED: uncharacterized protein LOC101217561 [Cucumis sativus]
           gi|449485804|ref|XP_004157278.1| PREDICTED:
           uncharacterized protein LOC101225513 [Cucumis sativus]
          Length = 234

 Score =  152 bits (385), Expect = 2e-35
 Identities = 76/110 (69%), Positives = 92/110 (83%)
 Frame = -2

Query: 330 LNNSWVDKIKGVFTGPKPSTNDSQQANSQSFTLLKFADEMVTARKAGSFKKFIVGRSSDA 151
           L+ SW+DKIKGV +G K ST +    +S+SFTLL+FADE+  AR+ G+ K++IVGRSS+A
Sbjct: 51  LHGSWMDKIKGVISGKKNST-EGTDISSESFTLLRFADELKNARRVGALKQYIVGRSSEA 109

Query: 150 TFATAFEKQEAIIRYLGGFDPSGENIKPSQKQEAAKKCNCTIQDVENALS 1
           TFA AFEKQEAIIRYLGGFD +GENI+ SQKQEAAK CNCTI +VENALS
Sbjct: 110 TFADAFEKQEAIIRYLGGFDSTGENIQTSQKQEAAKNCNCTIAEVENALS 159


>ref|XP_002274439.1| PREDICTED: protein translocase subunit SecA 1-like [Vitis vinifera]
          Length = 227

 Score =  150 bits (379), Expect = 1e-34
 Identities = 74/111 (66%), Positives = 91/111 (81%)
 Frame = -2

Query: 333 HLNNSWVDKIKGVFTGPKPSTNDSQQANSQSFTLLKFADEMVTARKAGSFKKFIVGRSSD 154
           HL+ SW+DKIKGV TG K + +   Q  ++ FTLL+FA+E+  AR AG+FK+F+VGRSS+
Sbjct: 47  HLDASWMDKIKGVLTGKKAAPDG--QITTEEFTLLRFANELKAARAAGTFKRFVVGRSSE 104

Query: 153 ATFATAFEKQEAIIRYLGGFDPSGENIKPSQKQEAAKKCNCTIQDVENALS 1
           ATFA AF KQEAIIRYLG FDPSG+N++ SQKQEAAK CNCTI DVENAL+
Sbjct: 105 ATFADAFGKQEAIIRYLGRFDPSGDNLQTSQKQEAAKNCNCTIADVENALA 155


>ref|XP_002512267.1| conserved hypothetical protein [Ricinus communis]
           gi|223548228|gb|EEF49719.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 224

 Score =  145 bits (366), Expect = 3e-33
 Identities = 71/107 (66%), Positives = 86/107 (80%)
 Frame = -2

Query: 321 SWVDKIKGVFTGPKPSTNDSQQANSQSFTLLKFADEMVTARKAGSFKKFIVGRSSDATFA 142
           SW+D IKGVFTG K    DS+    QSFTL++FADE+  AR+ GSFKKFIVGRSS+ATF+
Sbjct: 46  SWMDSIKGVFTGQK---GDSKDTAVQSFTLIRFADELKNARRVGSFKKFIVGRSSEATFS 102

Query: 141 TAFEKQEAIIRYLGGFDPSGENIKPSQKQEAAKKCNCTIQDVENALS 1
            AFEK E IIRYL GFDP+GEN++ +QKQEAAK CNCTI +VE +L+
Sbjct: 103 DAFEKMERIIRYLSGFDPTGENLQTTQKQEAAKHCNCTIAEVERSLA 149


>gb|AFK33624.1| unknown [Lotus japonicus]
          Length = 213

 Score =  144 bits (363), Expect = 7e-33
 Identities = 71/113 (62%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
 Frame = -2

Query: 336 PHLNNSWVDKIKGVFTGPKPSTN-DSQQANSQSFTLLKFADEMVTARKAGSFKKFIVGRS 160
           P L NSWVDK+K VFTG K +T  ++  + + SFTLL FADEM  ARK G+FK ++VGRS
Sbjct: 29  PQLQNSWVDKVKTVFTGQKTTTTTENPSSTTDSFTLLHFADEMKKARKIGAFKDYVVGRS 88

Query: 159 SDATFATAFEKQEAIIRYLGGFDPSGENIKPSQKQEAAKKCNCTIQDVENALS 1
           S+ TF TAFEK EAIIR+LG  DP+GE ++ +QKQ AAK CNCTI DVENAL+
Sbjct: 89  SEVTFTTAFEKNEAIIRFLGVLDPTGEKLQSAQKQAAAKHCNCTIIDVENALA 141


>ref|XP_002319047.1| predicted protein [Populus trichocarpa] gi|222857423|gb|EEE94970.1|
           predicted protein [Populus trichocarpa]
          Length = 222

 Score =  144 bits (362), Expect = 1e-32
 Identities = 72/108 (66%), Positives = 85/108 (78%)
 Frame = -2

Query: 324 NSWVDKIKGVFTGPKPSTNDSQQANSQSFTLLKFADEMVTARKAGSFKKFIVGRSSDATF 145
           +SW+D IKGVFTG K  T D+ +    SFTLL FAD M  AR+ GS K+F+VGRSS+ATF
Sbjct: 47  SSWMDTIKGVFTGKKAETEDTPE----SFTLLSFADGMKNARRVGSLKQFVVGRSSEATF 102

Query: 144 ATAFEKQEAIIRYLGGFDPSGENIKPSQKQEAAKKCNCTIQDVENALS 1
           ++AFEKQEAIIRYLG  DP+GEN++ SQKQEAAK CNCTI DVE  LS
Sbjct: 103 SSAFEKQEAIIRYLGALDPTGENLQTSQKQEAAKHCNCTIADVEITLS 150


Top