BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00029014
         (411 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containi...   205   3e-51
ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containi...   205   3e-51
gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsu...   202   2e-50
ref|XP_002305798.1| predicted protein [Populus trichocarpa] gi|2...   198   4e-49
ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|2...   195   4e-48

>ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  205 bits (522), Expect = 3e-51
 Identities = 92/137 (67%), Positives = 112/137 (81%)
 Frame = -1

Query: 411 GALSLGRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGRAREVFNGMPVRNVMTWTSMI 232
           GAL  G W HDY    G D+NV+LGTSL+NMY RCGNV +AREVF+ M  RNV+TWT+MI
Sbjct: 304 GALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMI 363

Query: 231 SGYGMHGYGKEAIELFHQMRTCGPQPNDVTFIAVLSACAHVGLVEKGREVLTCMKQMYGL 52
           SGYGMHGYG++A+ELF +MR  GP+PN++TF+AVLSACAH GL++ GR V + MK+ YGL
Sbjct: 364 SGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGL 423

Query: 51  VPRVEHHVCMVDMLGRA 1
           VP VEH+VCMVDM GRA
Sbjct: 424 VPGVEHNVCMVDMFGRA 440



 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 38/106 (35%), Positives = 68/106 (64%)
 Frame = -1

Query: 408 ALSLGRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGRAREVFNGMPVRNVMTWTSMIS 229
           AL LG+  H +V+  G   ++ +  +L+ +YA+  ++  A++VF+ MP R ++ W S+IS
Sbjct: 204 ALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLIS 263

Query: 228 GYGMHGYGKEAIELFHQMRTCGPQPNDVTFIAVLSACAHVGLVEKG 91
           GY  +G  +E+I LFH M   G QP+  T +++LS+C+ +G ++ G
Sbjct: 264 GYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFG 309


>ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  205 bits (522), Expect = 3e-51
 Identities = 92/137 (67%), Positives = 112/137 (81%)
 Frame = -1

Query: 411 GALSLGRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGRAREVFNGMPVRNVMTWTSMI 232
           GAL  G W HDY    G D+NV+LGTSL+NMY RCGNV +AREVF+ M  RNV+TWT+MI
Sbjct: 240 GALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMI 299

Query: 231 SGYGMHGYGKEAIELFHQMRTCGPQPNDVTFIAVLSACAHVGLVEKGREVLTCMKQMYGL 52
           SGYGMHGYG++A+ELF +MR  GP+PN++TF+AVLSACAH GL++ GR V + MK+ YGL
Sbjct: 300 SGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGL 359

Query: 51  VPRVEHHVCMVDMLGRA 1
           VP VEH+VCMVDM GRA
Sbjct: 360 VPGVEHNVCMVDMFGRA 376



 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 38/106 (35%), Positives = 68/106 (64%)
 Frame = -1

Query: 408 ALSLGRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGRAREVFNGMPVRNVMTWTSMIS 229
           AL LG+  H +V+  G   ++ +  +L+ +YA+  ++  A++VF+ MP R ++ W S+IS
Sbjct: 140 ALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLIS 199

Query: 228 GYGMHGYGKEAIELFHQMRTCGPQPNDVTFIAVLSACAHVGLVEKG 91
           GY  +G  +E+I LFH M   G QP+  T +++LS+C+ +G ++ G
Sbjct: 200 GYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFG 245


>gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
           gi|227463002|gb|ACP39953.1| pentatricopeptide repeat
           protein [Gossypium hirsutum]
          Length = 592

 Score =  202 bits (514), Expect = 2e-50
 Identities = 89/137 (64%), Positives = 114/137 (83%)
 Frame = -1

Query: 411 GALSLGRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGRAREVFNGMPVRNVMTWTSMI 232
           GA+ LG W H+Y+     D+NV+LGT+L+NMY+RCGNV +AREVF+ M  +N++ WT+MI
Sbjct: 233 GAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMI 292

Query: 231 SGYGMHGYGKEAIELFHQMRTCGPQPNDVTFIAVLSACAHVGLVEKGREVLTCMKQMYGL 52
           SGYGMHG+G +AIELF++M   GP+PN+VTF+AVLSACAH GLV++GR++ T MKQ YGL
Sbjct: 293 SGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGL 352

Query: 51  VPRVEHHVCMVDMLGRA 1
           VP VEH VCMVDMLGRA
Sbjct: 353 VPSVEHQVCMVDMLGRA 369



 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 47/106 (44%), Positives = 70/106 (66%)
 Frame = -1

Query: 408 ALSLGRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGRAREVFNGMPVRNVMTWTSMIS 229
           A S+G   H +V   G  ++  +  +LV+ YA+ G+V  AR+VF+ MP + V+ W SMIS
Sbjct: 133 AFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMIS 192

Query: 228 GYGMHGYGKEAIELFHQMRTCGPQPNDVTFIAVLSACAHVGLVEKG 91
           GY  +G+GKEA+ELF  M+  G +P+  TF+++LSACA VG +  G
Sbjct: 193 GYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLG 238


>ref|XP_002305798.1| predicted protein [Populus trichocarpa] gi|222848762|gb|EEE86309.1|
           predicted protein [Populus trichocarpa]
          Length = 584

 Score =  198 bits (503), Expect = 4e-49
 Identities = 90/137 (65%), Positives = 108/137 (78%)
 Frame = -1

Query: 411 GALSLGRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGRAREVFNGMPVRNVMTWTSMI 232
           GA  LG W H+Y V  GLD+NV+LGTSL+NMY RCGNV +AREVF+ M  RNV+ WT+MI
Sbjct: 226 GAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMI 285

Query: 231 SGYGMHGYGKEAIELFHQMRTCGPQPNDVTFIAVLSACAHVGLVEKGREVLTCMKQMYGL 52
           SGYG +GYG +A+ELFH+MR  G  PN +TF+AVLSACAH GLV +GR V   M++ Y L
Sbjct: 286 SGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRL 345

Query: 51  VPRVEHHVCMVDMLGRA 1
           VP VEHHVC+VDMLGRA
Sbjct: 346 VPEVEHHVCLVDMLGRA 362



 Score =  102 bits (255), Expect = 2e-20
 Identities = 49/101 (48%), Positives = 70/101 (69%)
 Frame = -1

Query: 408 ALSLGRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGRAREVFNGMPVRNVMTWTSMIS 229
           AL  GR  H +V+  G   +V + T+L++ Y +CG +  AR+VF+ M  R+V+TW SMIS
Sbjct: 126 ALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMIS 185

Query: 228 GYGMHGYGKEAIELFHQMRTCGPQPNDVTFIAVLSACAHVG 106
           GY  +G+ KEAI LF +M+  G +PN  TF++VLSACAH+G
Sbjct: 186 GYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLG 226


>ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|222870841|gb|EEF07972.1|
           predicted protein [Populus trichocarpa]
          Length = 585

 Score =  195 bits (495), Expect = 4e-48
 Identities = 88/137 (64%), Positives = 110/137 (80%)
 Frame = -1

Query: 411 GALSLGRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGRAREVFNGMPVRNVMTWTSMI 232
           GA SLG W H+Y+V  GLD+NV+LGTSL+NMY RCGNV +AREVF+ M  RNV+ WT+MI
Sbjct: 226 GAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMI 285

Query: 231 SGYGMHGYGKEAIELFHQMRTCGPQPNDVTFIAVLSACAHVGLVEKGREVLTCMKQMYGL 52
           SGYG +GYG +A+ELFH+MR  G  PN +TF+AVLSACAH GLV +GR +   +++ Y L
Sbjct: 286 SGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHL 345

Query: 51  VPRVEHHVCMVDMLGRA 1
           VP VEH+VC+VDMLGRA
Sbjct: 346 VPGVEHNVCLVDMLGRA 362



 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 46/106 (43%), Positives = 71/106 (66%)
 Frame = -1

Query: 408 ALSLGRWAHDYVVERGLDVNVILGTSLVNMYARCGNVGRAREVFNGMPVRNVMTWTSMIS 229
           AL  GR  H +V+  G  ++V +  +LV +Y +CG++  AR+VF+ +  R+++ W SMIS
Sbjct: 126 ALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMIS 185

Query: 228 GYGMHGYGKEAIELFHQMRTCGPQPNDVTFIAVLSACAHVGLVEKG 91
           GY  +G+ KEAI LF +M+  G +P+  TF++VLSACAH+G    G
Sbjct: 186 GYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLG 231