BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028972
         (357 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic ...   122   3e-26
ref|XP_002529065.1| DNA polymerase epsilon, catalytic subunit, p...   113   1e-23
ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|2...   102   3e-20
gb|AAF18240.1|AC011438_2 T23G18.11 [Arabidopsis thaliana]             100   1e-19
ref|NP_172303.5| DNA polymerase epsilon subunit 1 [Arabidopsis t...   100   1e-19

>ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis
            vinifera]
          Length = 2214

 Score =  122 bits (306), Expect = 3e-26
 Identities = 65/137 (47%), Positives = 83/137 (60%), Gaps = 19/137 (13%)
 Frame = -2

Query: 356  DDKFRQRKLVDMFSRLKKGD-------------------VEDLEDFRSKDGASIVGPRPI 234
            ++KFRQRKLVDMF  LK+ D                   +EDLEDFR+K   S  GPRPI
Sbjct: 1144 EEKFRQRKLVDMFGSLKRDDNVKMNVDAITSNHVISEENIEDLEDFRNKGRTSSAGPRPI 1203

Query: 233  VRSYEMNKERPSAKASCRMVPPQQQTDANNRLHQPLTPFVGNAVTKENIDRSVDYQGWLE 54
            VR YE+N ++ S   +C    PQ+     N     LTP     ++ +NIDR+VDYQGWLE
Sbjct: 1204 VRCYEVNGKQQSDAMNCLANSPQEPA---NHSESALTPMQPTDISTDNIDRNVDYQGWLE 1260

Query: 53   LKKRKWKNSREERKRHR 3
            +KKRKWK++RE+RKR R
Sbjct: 1261 MKKRKWKDAREKRKRQR 1277


>ref|XP_002529065.1| DNA polymerase epsilon, catalytic subunit, putative [Ricinus
            communis] gi|223531477|gb|EEF33309.1| DNA polymerase
            epsilon, catalytic subunit, putative [Ricinus communis]
          Length = 2227

 Score =  113 bits (283), Expect = 1e-23
 Identities = 67/137 (48%), Positives = 79/137 (57%), Gaps = 19/137 (13%)
 Frame = -2

Query: 356  DDKFRQRKLVDMFSRLKKGD-------------------VEDLEDFRSKDGASIVGPRPI 234
            +DKFRQRKLVD+F    K D                   VEDLEDFR+K   S  GPRPI
Sbjct: 1146 EDKFRQRKLVDIFRLSSKEDFVRKNNDTITDNCMMDEENVEDLEDFRNKS-ISTNGPRPI 1204

Query: 233  VRSYEMNKERPSAKASCRMVPPQQQTDANNRLHQPLTPFVGNAVTKENIDRSVDYQGWLE 54
            V  Y  N E  S KA+ RM    QQTD    +H+  +     A + E+IDR+VDYQGWLE
Sbjct: 1205 VHCYATNSEEHSVKATGRMDSSHQQTDNGESVHELSSLVQQTASSGESIDRNVDYQGWLE 1264

Query: 53   LKKRKWKNSREERKRHR 3
            LKKRKWK++ E RKR R
Sbjct: 1265 LKKRKWKDTLERRKRQR 1281


>ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|222837682|gb|EEE76047.1|
            predicted protein [Populus trichocarpa]
          Length = 2221

 Score =  102 bits (254), Expect = 3e-20
 Identities = 62/135 (45%), Positives = 85/135 (62%), Gaps = 17/135 (12%)
 Frame = -2

Query: 356  DDKFRQRKLVDMFSRLKKGD-----------------VEDLEDFRSKDGASIVGPRPIVR 228
            +DKFRQRKLVD+F+   + D                 V+DLEDF+ K  +SI  PRPIVR
Sbjct: 1145 EDKFRQRKLVDIFNLRSRDDLSRKMDDATITNHDEANVKDLEDFQIKS-SSINRPRPIVR 1203

Query: 227  SYEMNKERPSAKASCRMVPPQQQTDANNRLHQPLTPFVGNAVTKENIDRSVDYQGWLELK 48
             Y++N++R SAK + ++   +QQTD+   +H+  +    N    ENIDR+VDYQGWLELK
Sbjct: 1204 CYDVNEKR-SAKKTGQLNSAEQQTDS---VHELSSQPQHNTSYAENIDRNVDYQGWLELK 1259

Query: 47   KRKWKNSREERKRHR 3
            KRKWK+  + RK+ R
Sbjct: 1260 KRKWKDILDRRKKQR 1274


>gb|AAF18240.1|AC011438_2 T23G18.11 [Arabidopsis thaliana]
          Length = 2271

 Score =  100 bits (249), Expect = 1e-19
 Identities = 56/130 (43%), Positives = 77/130 (59%), Gaps = 12/130 (9%)
 Frame = -2

Query: 356  DDKFRQRKLVDMFSR------------LKKGDVEDLEDFRSKDGASIVGPRPIVRSYEMN 213
            DDKFRQRKLVDMFS             + K +VED+EDF  ++  S+ GP+PI RSYE+N
Sbjct: 1165 DDKFRQRKLVDMFSSANKDVVLDTDLPVTKDNVEDIEDFCKENRPSVKGPKPIARSYEVN 1224

Query: 212  KERPSAKASCRMVPPQQQTDANNRLHQPLTPFVGNAVTKENIDRSVDYQGWLELKKRKWK 33
            K++            +QQ   +   H          ++ +NID+SV+YQGWLELKKRKWK
Sbjct: 1225 KKQSEC---------EQQESWDTEFHD---------ISFQNIDKSVNYQGWLELKKRKWK 1266

Query: 32   NSREERKRHR 3
             + E++K+ R
Sbjct: 1267 VTLEKKKKRR 1276


>ref|NP_172303.5| DNA polymerase epsilon subunit 1 [Arabidopsis thaliana]
            gi|426019656|sp|F4HW04.1|DPOE1_ARATH RecName: Full=DNA
            polymerase epsilon catalytic subunit A; AltName: Full=DNA
            polymerase 2 a; Short=AtPOL2a; AltName: Full=DNA
            polymerase II subunit a; AltName: Full=Protein ABA OVERLY
            SENSITIVE a; AltName: Full=Protein EARLY IN SHORT DAYS 7;
            AltName: Full=Protein EMBRYO DEFECTIVE 142; AltName:
            Full=Protein EMBRYO DEFECTIVE 2284; AltName: Full=Protein
            EMBRYO DEFECTIVE 529; AltName: Full=Protein TILTED 1
            gi|332190145|gb|AEE28266.1| DNA polymerase epsilon
            subunit 1 [Arabidopsis thaliana]
          Length = 2161

 Score =  100 bits (249), Expect = 1e-19
 Identities = 56/130 (43%), Positives = 77/130 (59%), Gaps = 12/130 (9%)
 Frame = -2

Query: 356  DDKFRQRKLVDMFSR------------LKKGDVEDLEDFRSKDGASIVGPRPIVRSYEMN 213
            DDKFRQRKLVDMFS             + K +VED+EDF  ++  S+ GP+PI RSYE+N
Sbjct: 1144 DDKFRQRKLVDMFSSANKDVVLDTDLPVTKDNVEDIEDFCKENRPSVKGPKPIARSYEVN 1203

Query: 212  KERPSAKASCRMVPPQQQTDANNRLHQPLTPFVGNAVTKENIDRSVDYQGWLELKKRKWK 33
            K++            +QQ   +   H          ++ +NID+SV+YQGWLELKKRKWK
Sbjct: 1204 KKQSEC---------EQQESWDTEFHD---------ISFQNIDKSVNYQGWLELKKRKWK 1245

Query: 32   NSREERKRHR 3
             + E++K+ R
Sbjct: 1246 VTLEKKKKRR 1255