BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028870
         (402 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003604365.1| Pentatricopeptide repeat-containing protein ...   153   1e-35
ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat...   150   8e-35
ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containi...   147   9e-34
ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containi...   147   1e-33
dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]                          147   1e-33

>ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355505420|gb|AES86562.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  153 bits (387), Expect = 1e-35
 Identities = 68/133 (51%), Positives = 96/133 (72%)
 Frame = +3

Query: 3   FLEALELFRVMQVSDVKPNEVTVVAVLPVCAHLGALDLGKWVHAYIDRNRVKIDVYVNTA 182
           F E L LFR MQ+S+VKP+E T+V++L  CAHLGAL+LG+W   YID+N++K D ++  A
Sbjct: 353 FKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNA 412

Query: 183 LIDMYGKCGSVEDAKRVFNNAHVKDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPN 362
           LIDMY KCG+VE AK++FN    KD F  + MI  L  +G  EEA T+FSYM    + P+
Sbjct: 413 LIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPD 472

Query: 363 DVTFVGILKACSH 401
           ++T++G++ AC+H
Sbjct: 473 EITYIGVMCACTH 485


>ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  150 bits (380), Expect = 8e-35
 Identities = 71/133 (53%), Positives = 95/133 (71%)
 Frame = +3

Query: 3   FLEALELFRVMQVSDVKPNEVTVVAVLPVCAHLGALDLGKWVHAYIDRNRVKIDVYVNTA 182
           F+EAL LFR MQ+S+VKP+E T+V++L  CAHLGAL+LG+WV  YID+N +K D +V  A
Sbjct: 321 FIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNA 380

Query: 183 LIDMYGKCGSVEDAKRVFNNAHVKDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPN 362
           LIDMY KCG+V  AK+VF   H KD F  + MI  L  +G  EEA  +FS M    I P+
Sbjct: 381 LIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPD 440

Query: 363 DVTFVGILKACSH 401
           ++T++G+L AC+H
Sbjct: 441 EITYIGVLCACTH 453



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 31/164 (18%)
 Frame = +3

Query: 3   FLEALELFRVMQVSDVKPNEVTVVAVLPVCAHLGALDLGKWVHAYIDRNRVKIDVYVNTA 182
           F ++  LF  M+   V PN VT+V +L  C+ L  L+ GK ++ YI+   V+ ++ +   
Sbjct: 189 FKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENV 248

Query: 183 LIDMYGKCGSVEDAKRVFNNAHVKDTFLCSTMIEVLGTHGKAE----------------- 311
           LIDM+  CG +++A+ VF+N   +D    ++++      G+ +                 
Sbjct: 249 LIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSW 308

Query: 312 --------------EAFTIFSYMRSTGIKPNDVTFVGILKACSH 401
                         EA  +F  M+ + +KP++ T V IL AC+H
Sbjct: 309 TAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAH 352


>ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  147 bits (371), Expect = 9e-34
 Identities = 70/133 (52%), Positives = 95/133 (71%)
 Frame = +3

Query: 3   FLEALELFRVMQVSDVKPNEVTVVAVLPVCAHLGALDLGKWVHAYIDRNRVKIDVYVNTA 182
           + EAL+ FR+MQ   VKP+EVT+V VL  CA+LG L++GKWVHAY+ RN +  D +V  A
Sbjct: 295 YREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNA 354

Query: 183 LIDMYGKCGSVEDAKRVFNNAHVKDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPN 362
           L+DMY KCGS+++A RVF +   +D +  + MI  L  HG+A  AF +FS M   GI+PN
Sbjct: 355 LLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPN 414

Query: 363 DVTFVGILKACSH 401
           +VTF+G+L ACSH
Sbjct: 415 EVTFLGLLMACSH 427



 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 51/134 (38%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = +3

Query: 3   FLEALELFRVMQVSDVKPNEVTVVAVLPVCAHLGALDLGKWVHAYIDRN-RVKIDVYVNT 179
           +  A+E F  M    ++ +  T+V VL  C++LG L+LG+ VH+YI     +K DV+V  
Sbjct: 193 YSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGN 252

Query: 180 ALIDMYGKCGSVEDAKRVFNNAHVKDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKP 359
           AL+DMY KC  +  A +VF+   VK+    + MI  L   G+  EA   F  M+  G+KP
Sbjct: 253 ALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKP 312

Query: 360 NDVTFVGILKACSH 401
           ++VT VG+L +C++
Sbjct: 313 DEVTLVGVLNSCAN 326



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
 Frame = +3

Query: 6   LEALELFRVMQVSDVKPNEVTVVAVLPVCAHLGALDLGKWVHAY-IDRNRVKIDVYVNTA 182
           L  +E    M V  ++P+  T+  VL   A +  +  G+ +HA  I    V  +VYV+  
Sbjct: 92  LSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNT 151

Query: 183 LIDMYGKCGSVEDAKRVFNNAHVKDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPN 362
           L+ +Y  CGS+ D ++VF+    +D    +T+I+     G    A   F  M    ++ +
Sbjct: 152 LMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRAD 211

Query: 363 DVTFVGILKACSH 401
             T V +L ACS+
Sbjct: 212 GRTLVVVLSACSN 224


>ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449529868|ref|XP_004171920.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  147 bits (370), Expect = 1e-33
 Identities = 67/133 (50%), Positives = 96/133 (72%)
 Frame = +3

Query: 3   FLEALELFRVMQVSDVKPNEVTVVAVLPVCAHLGALDLGKWVHAYIDRNRVKIDVYVNTA 182
           + EAL LFR M  S V+P E+T +++LP CAHLGA+DLGKW+HAYI++N   +   ++T+
Sbjct: 343 YKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTS 402

Query: 183 LIDMYGKCGSVEDAKRVFNNAHVKDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPN 362
           LID+Y KCG++  A++VF+   +K     + MI  L  HG+A++AF +FS M S GI+PN
Sbjct: 403 LIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPN 462

Query: 363 DVTFVGILKACSH 401
           ++TFVGIL AC H
Sbjct: 463 EITFVGILSACKH 475



 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 48/131 (36%), Positives = 80/131 (61%)
 Frame = +3

Query: 9   EALELFRVMQVSDVKPNEVTVVAVLPVCAHLGALDLGKWVHAYIDRNRVKIDVYVNTALI 188
           EAL LF  M+ ++V PNE T+V+VL  CA   ALDLG  + ++I+   +  ++ +  ALI
Sbjct: 244 EALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALI 303

Query: 189 DMYGKCGSVEDAKRVFNNAHVKDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPNDV 368
           DMY KCG ++ A+ +F++   +D    + MI         +EA  +F  M ++G++P ++
Sbjct: 304 DMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEI 363

Query: 369 TFVGILKACSH 401
           TF+ IL +C+H
Sbjct: 364 TFLSILPSCAH 374



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 31/160 (19%)
 Frame = +3

Query: 12  ALELFRVMQVSDVKPNEVTVVAVLPVCAHLGALDLGKWVHAYIDRNRVKIDVYVNTALID 191
           AL  F  M  S V+PN  T   +L  CA L +   GK +HA++ +     DV+++T+LI+
Sbjct: 113 ALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLIN 172

Query: 192 MYGKCGSVEDAKRVFNNAH-------------------------------VKDTFLCSTM 278
           MY + G + +A+ VF+ ++                               VKD    + M
Sbjct: 173 MYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAM 232

Query: 279 IEVLGTHGKAEEAFTIFSYMRSTGIKPNDVTFVGILKACS 398
           I      G+++EA  +F  MR   + PN+ T V +L AC+
Sbjct: 233 IAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACA 272



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
 Frame = +3

Query: 9   EALELFRVMQVSDVKPNEVTVVAVLPVCAHLGALDLG-KWVHAYIDRNRVKIDVYVNTAL 185
           +A ELF  M    ++PNE+T V +L  C H G +DLG ++  + +   ++         +
Sbjct: 446 KAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCM 505

Query: 186 IDMYGKCGSVEDAKRVFNNAHVK-DTFLCSTMIEVLGTHGKAE 311
           ID+ G+ G  E+A+ +  N  VK D  +  +++     HG+ E
Sbjct: 506 IDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVE 548


>dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  147 bits (370), Expect = 1e-33
 Identities = 69/131 (52%), Positives = 93/131 (70%)
 Frame = +3

Query: 9   EALELFRVMQVSDVKPNEVTVVAVLPVCAHLGALDLGKWVHAYIDRNRVKIDVYVNTALI 188
           EAL +FR MQV  ++P+EV++V VL  CA +GALD+GKWVHAYI +  + +D+ +NTALI
Sbjct: 176 EALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALI 235

Query: 189 DMYGKCGSVEDAKRVFNNAHVKDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPNDV 368
           +MY KCG +E A+ +F+   VKD+   S+MI  L  HG AE+A  +FS M     KPN V
Sbjct: 236 NMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHV 295

Query: 369 TFVGILKACSH 401
           TF+GIL AC+H
Sbjct: 296 TFIGILSACAH 306



 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
 Frame = +3

Query: 9   EALELFRVMQVSDV-KPNEVTVVAVLPVCAHLGALDLGKWVHAYIDRNRVKIDVYVNTAL 185
           E + LF+ M       PN  T+  VL  C+ + AL+ GK +HA I R+      YV ++L
Sbjct: 74  EPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSL 133

Query: 186 IDMYGKCGSVEDAKRVFNNAHVKDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPND 365
           ++ Y KC  +  A++VF+    ++    S M+      G   EA  +F  M+  GI+P++
Sbjct: 134 VNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDE 193

Query: 366 VTFVGILKACS 398
           V+ VG+L AC+
Sbjct: 194 VSLVGVLSACA 204