BLASTX nr result
ID: Coptis23_contig00028857
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00028857
(643 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia... 77 4e-12
ref|XP_002452333.1| hypothetical protein SORBIDRAFT_04g023880 [S... 76 6e-12
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 75 8e-12
ref|XP_002450843.1| hypothetical protein SORBIDRAFT_05g019526 [S... 75 1e-11
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 75 1e-11
>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
thaliana] gi|7269807|emb|CAB79667.1| putative protein
[Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
putative reverse transcriptase/RNA-dependent DNA
polymerase [Arabidopsis thaliana]
gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 575
Score = 76.6 bits (187), Expect = 4e-12
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 9/211 (4%)
Frame = -1
Query: 643 WNQNRLGELFPFQIIQSINRIHIRPSGSP--DHIIWPSTKNGELTVKSAYVFLTKQDNIS 470
W ++ + LFP + I + RP G D W T +G+ TVKS Y LT+ N
Sbjct: 182 WRKDVIEMLFPEVERKLIGEL--RPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKR 239
Query: 469 FSS------SFNPLSVKKLWKLHLDVATQLFIWKLYIGGLPTGDVLHKFKFKGDITCSFC 308
S S NP+ +K+WK Q F+WK LP L + C C
Sbjct: 240 SSPQEVSEPSLNPI-YQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRC 298
Query: 307 QRCIETASHVFFSCTWIKMMWYVSNAMLDINTHPDWDVKEWINQFICWCSSKDEDTCRK- 131
C ET +H+ F CT+ ++ W +S+ + I +W ++N + + K
Sbjct: 299 PSCKETVNHLLFKCTFARLTWAISS--IPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKA 356
Query: 130 GYLCLYILYELWLARNKARMECRPIELKSIL 38
L ++L+ LW RN+ R + +L
Sbjct: 357 SQLVPWLLWRLWKNRNELVFRGREFNAQEVL 387
>ref|XP_002452333.1| hypothetical protein SORBIDRAFT_04g023880 [Sorghum bicolor]
gi|241932164|gb|EES05309.1| hypothetical protein
SORBIDRAFT_04g023880 [Sorghum bicolor]
Length = 925
Score = 75.9 bits (185), Expect = 6e-12
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Frame = -1
Query: 643 WNQNRLGELFPFQIIQSINRIHIRPSG----SPDHIIWPSTKNGELTVKSAYVFLTKQDN 476
W+Q + +F Q+ I++I I P+ D + W +KNG T K Y +L Q+
Sbjct: 725 WHQPYIQSVFDNQLTNEISQIRIVPTNHNNPEDDILRWKPSKNGVCTTKEIYKYLYNQNI 784
Query: 475 ISF----SSSFNPLSV---KKLWKL-HLDVATQLFIWKLYIGGLPTGDVLHKFKFKGDIT 320
I S S +P ++ +K+WK + + F W+L L TGD + ++ +I
Sbjct: 785 IQLPDAGSRSISPQAISILQKVWKAPKMPPLIKTFAWRLMRRALATGDRVARYTKNININ 844
Query: 319 --CSFCQRCIETASHVFFSCTWIKMMWYVSNAMLDINTHP--DWDVKEWINQFICWCSSK 152
C+ C + IE +H+FF C K +W+ S+ L ++T P D V+E + FI S
Sbjct: 845 QNCNSCGQ-IENDAHLFFHCRLPKAVWFSSSPPLIVDTLPIEDDGVQEILTSFI--DDST 901
Query: 151 DEDTCRKGYLCLYILYELWLARNKAR 74
+D K ++ L+ LW ARN R
Sbjct: 902 PDDLLSKIFITLWF---LWKARNDNR 924
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 75.5 bits (184), Expect = 8e-12
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 3/205 (1%)
Frame = -1
Query: 643 WNQNRLGELFPFQIIQSINRIHIRPSGSPDHIIWPSTKNGELTVKSAYVFLTKQDNISFS 464
WN L LF +I RI + PD +W +KNG+ TV+SAY +D +
Sbjct: 981 WNVELLNTLFQPWESTAIQRIPVALQKKPDQWMWMMSKNGQFTVRSAYYHELLEDRKTGP 1040
Query: 463 SSFNPLSVK---KLWKLHLDVATQLFIWKLYIGGLPTGDVLHKFKFKGDITCSFCQRCIE 293
S+ ++K K+WK + +LF WK GL + K D C C E
Sbjct: 1041 STSRGPNLKLWQKIWKAKIPPKVKLFSWKAIHNGLAVYTNMRKRGMNIDGACPRCGEKEE 1100
Query: 292 TASHVFFSCTWIKMMWYVSNAMLDINTHPDWDVKEWINQFICWCSSKDEDTCRKGYLCLY 113
T H+ + C WY+S + + W+ + + KD + L
Sbjct: 1101 TTEHLIWGCDESSRAWYISPLRIHTGNIEAGSFRIWVESLL--DTHKDTEWWA---LFWM 1155
Query: 112 ILYELWLARNKARMECRPIELKSIL 38
I + +WL RNK E + + + ++
Sbjct: 1156 ICWNIWLGRNKWVFEKKKLAFQEVV 1180
>ref|XP_002450843.1| hypothetical protein SORBIDRAFT_05g019526 [Sorghum bicolor]
gi|241936686|gb|EES09831.1| hypothetical protein
SORBIDRAFT_05g019526 [Sorghum bicolor]
Length = 1209
Score = 75.1 bits (183), Expect = 1e-11
Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 14/203 (6%)
Frame = -1
Query: 643 WNQNRLGELFPFQIIQSINRIHIRPSGSPDHIIWPSTKNGELTVKSAY--VFLTKQDNIS 470
W+ +L E F ++I I + D W KNG TV+SAY + L K + +
Sbjct: 1014 WDMQKLHEFFAPMDRETIVNIPLSTRRQSDFWAWHYDKNGIFTVRSAYRMLVLRKNNMTA 1073
Query: 469 FSSSFNPLSVKK--------LWKLHLDVATQLFIWKLYIGGLPTGDVLHKFKFKGDITCS 314
S S S K LW + + ++F+W+L LP+GDVLH K TC+
Sbjct: 1074 CSDSVAGRSSTKADEKEWTALWHVQVPSKIKVFLWRLARQSLPSGDVLHHRNLKAQSTCA 1133
Query: 313 FCQRCIETASHVFFSCTWIKMMWYVSNAMLDINTH----PDWDVKEWINQFICWCSSKDE 146
C +++ H C K +W + DI H P D + W++ I + K E
Sbjct: 1134 IC-GALDSWKHSLIDCHMAKCVWALERE--DITEHLCTIPVQDARGWLHTII--TTLKHE 1188
Query: 145 DTCRKGYLCLYILYELWLARNKA 77
D R L L+ +W A+ +A
Sbjct: 1189 DLTR----VLVTLWAIWYAKRQA 1207
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 74.7 bits (182), Expect = 1e-11
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 4/191 (2%)
Frame = -1
Query: 643 WNQNRLGELFPFQIIQSINRIHIRPSGSPDHIIWPSTKNGELTVKSAYVFLTKQDNISFS 464
W+ +++ + I+RI++ S PD IIW GE TV+S Y LT + +
Sbjct: 1128 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 1187
Query: 463 SSFNP---LSVK-KLWKLHLDVATQLFIWKLYIGGLPTGDVLHKFKFKGDITCSFCQRCI 296
+ P + +K ++W L + + F+W+ L T + L + D C C R
Sbjct: 1188 AINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHREN 1247
Query: 295 ETASHVFFSCTWIKMMWYVSNAMLDINTHPDWDVKEWINQFICWCSSKDEDTCRKGYLCL 116
E+ +H F+C + M W++S++ L N D +E I+ + + K L +
Sbjct: 1248 ESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHK-LLPV 1306
Query: 115 YILYELWLARN 83
++++ +W ARN
Sbjct: 1307 WLIWRIWKARN 1317