BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028842
         (332 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532904.1| pentatricopeptide repeat-containing protein,...   152   2e-35
ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containi...   139   2e-31
ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containi...   139   2e-31
emb|CBI22269.3| unnamed protein product [Vitis vinifera]              137   7e-31
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi...   137   7e-31

>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 604

 Score =  152 bits (385), Expect = 2e-35
 Identities = 72/110 (65%), Positives = 87/110 (79%)
 Frame = +3

Query: 3   RLLEQKISDLHKCTNLNHLKQIKAQIFKSNLHQDLYIAPKLITAFSNCRQISLAYNVFCL 182
           RL E+K+ DLHKCT+ NH+K++ AQI K NLH DLY+APKLI+AFS C Q++LA NVF  
Sbjct: 21  RLFEEKLQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQ 80

Query: 183 ILEPNVLLYNTLIRAYTQNLLHGKAFTVFFDMQRNSVFADNFTYPILVKA 332
           I +PNV LYNTLIRA+ QN    KAF  FFDMQ+N +FADNFTYP L+KA
Sbjct: 81  IQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKA 130


>ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 561

 Score =  139 bits (350), Expect = 2e-31
 Identities = 67/109 (61%), Positives = 84/109 (77%)
 Frame = +3

Query: 3   RLLEQKISDLHKCTNLNHLKQIKAQIFKSNLHQDLYIAPKLITAFSNCRQISLAYNVFCL 182
           +LLEQK+SDLHKCTNLN +KQ+ AQI KSNLH DL++ PKLI+AFS CRQ+ LA N F  
Sbjct: 44  KLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQ 103

Query: 183 ILEPNVLLYNTLIRAYTQNLLHGKAFTVFFDMQRNSVFADNFTYPILVK 329
           +  PNV LYNT+IRA++ N    +AF  FF MQR+  +ADNFT+P L+K
Sbjct: 104 VQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLK 152


>ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  139 bits (350), Expect = 2e-31
 Identities = 67/109 (61%), Positives = 84/109 (77%)
 Frame = +3

Query: 3   RLLEQKISDLHKCTNLNHLKQIKAQIFKSNLHQDLYIAPKLITAFSNCRQISLAYNVFCL 182
           +LLEQK+SDLHKCTNLN +KQ+ AQI KSNLH DL++ PKLI+AFS CRQ+ LA N F  
Sbjct: 18  KLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQ 77

Query: 183 ILEPNVLLYNTLIRAYTQNLLHGKAFTVFFDMQRNSVFADNFTYPILVK 329
           +  PNV LYNT+IRA++ N    +AF  FF MQR+  +ADNFT+P L+K
Sbjct: 78  VQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLK 126


>emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  137 bits (346), Expect = 7e-31
 Identities = 68/110 (61%), Positives = 88/110 (80%)
 Frame = +3

Query: 3   RLLEQKISDLHKCTNLNHLKQIKAQIFKSNLHQDLYIAPKLITAFSNCRQISLAYNVFCL 182
           RLLEQKISDLH+C++LN +KQI AQ+ K+NLH++ ++  KLI AFS CRQ++LA NVF  
Sbjct: 15  RLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQ 74

Query: 183 ILEPNVLLYNTLIRAYTQNLLHGKAFTVFFDMQRNSVFADNFTYPILVKA 332
           I +P+VLLYNTLIRA+ +N     AF+VFF+MQ + V ADNFTYP L+KA
Sbjct: 75  IQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKA 124


>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  137 bits (346), Expect = 7e-31
 Identities = 68/110 (61%), Positives = 88/110 (80%)
 Frame = +3

Query: 3   RLLEQKISDLHKCTNLNHLKQIKAQIFKSNLHQDLYIAPKLITAFSNCRQISLAYNVFCL 182
           RLLEQKISDLH+C++LN +KQI AQ+ K+NLH++ ++  KLI AFS CRQ++LA NVF  
Sbjct: 15  RLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQ 74

Query: 183 ILEPNVLLYNTLIRAYTQNLLHGKAFTVFFDMQRNSVFADNFTYPILVKA 332
           I +P+VLLYNTLIRA+ +N     AF+VFF+MQ + V ADNFTYP L+KA
Sbjct: 75  IQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKA 124