BLASTX nr result
ID: Coptis23_contig00028835
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00028835
(727 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI32698.3| unnamed protein product [Vitis vinifera] 190 3e-69
ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containi... 190 1e-68
ref|NP_190904.1| pentatricopeptide repeat-containing protein [Ar... 177 3e-64
ref|XP_002876202.1| pentatricopeptide repeat-containing protein ... 176 1e-63
ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [S... 184 2e-59
>emb|CBI32698.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 190 bits (483), Expect(3) = 3e-69
Identities = 91/136 (66%), Positives = 111/136 (81%)
Frame = +3
Query: 318 QLFETMRSAGIKPNNVTFVGVLSACSHVGLVEEGCNYYKITESDYGITPTREHCCCVVDM 497
+LF+TMR +KPN+VTFVGVL+ACSHVGLVEEG Y E ++GI PTREHC C+VD+
Sbjct: 294 KLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDL 353
Query: 498 LARAGRLKEAENFISQMLFDPDIVVFKTLLAACRNRGDVEVAKRAADSVWKLDPSDSASH 677
LARAG L EAE FI QM FDPDIVV+KTLLAAC+ G+V+V KRAA+++ K+DPS+SA+H
Sbjct: 354 LARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAH 413
Query: 678 VLLGNILASTGNWGEV 725
VLL NI AS GNW +V
Sbjct: 414 VLLCNIYASKGNWEDV 429
Score = 61.6 bits (148), Expect(3) = 3e-69
Identities = 30/52 (57%), Positives = 37/52 (71%)
Frame = +1
Query: 175 NGLKADLMQYTAIMDARKYFESMTHPDVVSWSTLIVGYAQFGYGEEALNFLK 330
NGL + ++ A K F+SM +PDVVSWS+LI+GYAQFGYGEEAL K
Sbjct: 246 NGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFK 297
Score = 57.8 bits (138), Expect(3) = 3e-69
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +2
Query: 2 GSLSAAFNIFDKMTTNLDSLSWNAILTACVRHNQPNDAC*FLKLMHTSEYKIDHITL 172
G L A F++M N D +SWNAILTAC+RH+Q + LKLM S+++ D+ITL
Sbjct: 154 GELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITL 210
>ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 190 bits (483), Expect(3) = 1e-68
Identities = 91/136 (66%), Positives = 111/136 (81%)
Frame = +3
Query: 318 QLFETMRSAGIKPNNVTFVGVLSACSHVGLVEEGCNYYKITESDYGITPTREHCCCVVDM 497
+LF+TMR +KPN+VTFVGVL+ACSHVGLVEEG Y E ++GI PTREHC C+VD+
Sbjct: 556 KLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDL 615
Query: 498 LARAGRLKEAENFISQMLFDPDIVVFKTLLAACRNRGDVEVAKRAADSVWKLDPSDSASH 677
LARAG L EAE FI QM FDPDIVV+KTLLAAC+ G+V+V KRAA+++ K+DPS+SA+H
Sbjct: 616 LARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAH 675
Query: 678 VLLGNILASTGNWGEV 725
VLL NI AS GNW +V
Sbjct: 676 VLLCNIYASKGNWEDV 691
Score = 61.6 bits (148), Expect(3) = 1e-68
Identities = 30/52 (57%), Positives = 37/52 (71%)
Frame = +1
Query: 175 NGLKADLMQYTAIMDARKYFESMTHPDVVSWSTLIVGYAQFGYGEEALNFLK 330
NGL + ++ A K F+SM +PDVVSWS+LI+GYAQFGYGEEAL K
Sbjct: 508 NGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFK 559
Score = 55.5 bits (132), Expect(3) = 1e-68
Identities = 27/55 (49%), Positives = 37/55 (67%)
Frame = +2
Query: 8 LSAAFNIFDKMTTNLDSLSWNAILTACVRHNQPNDAC*FLKLMHTSEYKIDHITL 172
L A F++M N D +SWNAILTAC+RH+Q + LKLM S+++ D+ITL
Sbjct: 418 LRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITL 472
>ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g53360, mitochondrial; Flags: Precursor
gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis
thaliana] gi|332645554|gb|AEE79075.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 768
Score = 177 bits (449), Expect(3) = 3e-64
Identities = 80/132 (60%), Positives = 112/132 (84%)
Frame = +3
Query: 321 LFETMRSAGIKPNNVTFVGVLSACSHVGLVEEGCNYYKITESDYGITPTREHCCCVVDML 500
LF+ M+SAGI+PN+VTFVGVL+ACSHVGLVEEG Y ++++GI+PT+EHC CVVD+L
Sbjct: 561 LFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLL 620
Query: 501 ARAGRLKEAENFISQMLFDPDIVVFKTLLAACRNRGDVEVAKRAADSVWKLDPSDSASHV 680
ARAGRL EAE FI +M +PD+VV+KTLL+AC+ +G+V +A++AA+++ K+DP +S +HV
Sbjct: 621 ARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHV 680
Query: 681 LLGNILASTGNW 716
LL ++ AS+GNW
Sbjct: 681 LLCSMHASSGNW 692
Score = 58.9 bits (141), Expect(3) = 3e-64
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = +2
Query: 8 LSAAFNIFDKMTTNLDSLSWNAILTACVRHNQPNDAC*FLKLMHTSEYKIDHITL 172
L FN+F+ N DS+SWN ILTAC++H QP + KLM SE + DHIT+
Sbjct: 422 LYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITM 476
Score = 56.6 bits (135), Expect(3) = 3e-64
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = +1
Query: 175 NGLKADLMQYTAIMDARKYFESMTHPDVVSWSTLIVGYAQFGYGEEALNFLKQ 333
NGL + ++ AR+ F+SM + DVVSWSTLIVGYAQ G+GEEAL K+
Sbjct: 512 NGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKE 564
>ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297322040|gb|EFH52461.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 769
Score = 176 bits (447), Expect(3) = 1e-63
Identities = 79/132 (59%), Positives = 112/132 (84%)
Frame = +3
Query: 321 LFETMRSAGIKPNNVTFVGVLSACSHVGLVEEGCNYYKITESDYGITPTREHCCCVVDML 500
LF M+S+GI+PN+VTFVGVL+ACSHVGLVEEG Y I ++++GI+PT+EHC CVVD+L
Sbjct: 558 LFREMKSSGIEPNHVTFVGVLTACSHVGLVEEGLKLYAIMQTEHGISPTKEHCSCVVDLL 617
Query: 501 ARAGRLKEAENFISQMLFDPDIVVFKTLLAACRNRGDVEVAKRAADSVWKLDPSDSASHV 680
ARAG L EAE FI +M +PD+VV+KTLL+AC+ +G+V++A++AA+++ K+DP +S +HV
Sbjct: 618 ARAGHLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVDLAQKAAENILKIDPFNSTAHV 677
Query: 681 LLGNILASTGNW 716
LL ++ AS+GNW
Sbjct: 678 LLCSMHASSGNW 689
Score = 58.2 bits (139), Expect(3) = 1e-63
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = +2
Query: 8 LSAAFNIFDKMTTNLDSLSWNAILTACVRHNQPNDAC*FLKLMHTSEYKIDHITL 172
L FN+F+ DS+SWNAILTAC++H QP + KLM SE + DHIT+
Sbjct: 419 LYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEPDHITM 473
Score = 56.2 bits (134), Expect(3) = 1e-63
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +1
Query: 175 NGLKADLMQYTAIMDARKYFESMTHPDVVSWSTLIVGYAQFGYGEEALNFLKQ 333
NGL + ++ AR+ F+SM + DVVSWSTLIVGYAQ G+GEEAL ++
Sbjct: 509 NGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFRE 561
>ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
gi|241939380|gb|EES12525.1| hypothetical protein
SORBIDRAFT_06g022800 [Sorghum bicolor]
Length = 766
Score = 184 bits (466), Expect(3) = 2e-59
Identities = 86/134 (64%), Positives = 107/134 (79%)
Frame = +3
Query: 321 LFETMRSAGIKPNNVTFVGVLSACSHVGLVEEGCNYYKITESDYGITPTREHCCCVVDML 500
LF MR+ G+KPN+VTFVGVL+ACS VGLV+EGC YY I + +YGI PTREHC CV+D+L
Sbjct: 542 LFARMRNLGVKPNHVTFVGVLTACSRVGLVDEGCYYYSIMKPEYGIVPTREHCSCVLDLL 601
Query: 501 ARAGRLKEAENFISQMLFDPDIVVFKTLLAACRNRGDVEVAKRAADSVWKLDPSDSASHV 680
ARAGRL EA F+ QM F+PDI+++KTLLAA R DV++ KRAA+ V +DPS SA++V
Sbjct: 602 ARAGRLSEAAKFVDQMPFEPDIIMWKTLLAASRTHNDVDMGKRAAEGVLNIDPSHSAAYV 661
Query: 681 LLGNILASTGNWGE 722
LL NI AS+GNW E
Sbjct: 662 LLCNIYASSGNWNE 675
Score = 50.4 bits (119), Expect(3) = 2e-59
Identities = 28/50 (56%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 175 NGLKADLMQYTAIMDARKYFESM-THPDVVSWSTLIVGYAQFGYGEEALN 321
NGL + ++ DA K FE M T DV SWS+LIVGYAQFGY +EAL+
Sbjct: 492 NGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALD 541
Score = 42.4 bits (98), Expect(3) = 2e-59
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +2
Query: 11 SAAFNIFDKMTTNLDSLSWNAILTACVRHNQPNDAC*FLKLMHTSEYKIDHITL 172
S+A ++F + T + D ++WN+ILTACV+H D L+H S +D I+L
Sbjct: 404 SSAMDVFHE-THDRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISL 456