BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028785
         (288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]    97   1e-18
emb|CBI34757.3| unnamed protein product [Vitis vinifera]               96   4e-18
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...    94   9e-18
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...    86   2e-15
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...    84   1e-14

>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 44/95 (46%), Positives = 58/95 (61%)
 Frame = -2

Query: 287 LGLPNEASECSTCGATSAKDCDGHLGMLTLPKDICHPYNLSVIVKILNSICPSCKSNKKE 108
           LG+PN + +CSTCGA   K C+GH G++  P  I HPY L+ +V+ILN ICP CKS ++ 
Sbjct: 48  LGVPNPSCQCSTCGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQG 107

Query: 107 SRNKGSGRKPKMSNIASHQPMGCKYCAESSKKWYP 3
              KG+      S     +  GCKYCA +S  WYP
Sbjct: 108 QWVKGAD-----SGSRRLRSKGCKYCAANSNDWYP 137


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 44/95 (46%), Positives = 59/95 (62%)
 Frame = -2

Query: 287 LGLPNEASECSTCGATSAKDCDGHLGMLTLPKDICHPYNLSVIVKILNSICPSCKSNKKE 108
           LG+PN + +CSTCGA   K C+GH G++  P  I HPY L+ +V+ILN ICP CKS ++ 
Sbjct: 48  LGVPNPSCQCSTCGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQ- 106

Query: 107 SRNKGSGRKPKMSNIASHQPMGCKYCAESSKKWYP 3
                 G+  K+  + S    GCKYCA +S  WYP
Sbjct: 107 ------GQWVKVRRLRS---KGCKYCAANSNDWYP 132


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
           sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
           QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
           1-like [Cucumis sativus]
          Length = 1469

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 42/95 (44%), Positives = 58/95 (61%)
 Frame = -2

Query: 287 LGLPNEASECSTCGATSAKDCDGHLGMLTLPKDICHPYNLSVIVKILNSICPSCKSNKKE 108
           LGLPN + +C+TCGA+S K C+GH G++  P  I HPY LS + ++LN +CP CKS ++E
Sbjct: 48  LGLPNPSYQCTTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQE 107

Query: 107 SRNKGSGRKPKMSNIASHQPMGCKYCAESSKKWYP 3
              K             ++P GC+YC  S K WYP
Sbjct: 108 LWGKVEDPTSDY-----NRPKGCRYCFGSLKDWYP 137


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
           gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
           subunit beta [Medicago truncatula]
          Length = 1687

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 41/95 (43%), Positives = 56/95 (58%)
 Frame = -2

Query: 287 LGLPNEASECSTCGATSAKDCDGHLGMLTLPKDICHPYNLSVIVKILNSICPSCKSNKKE 108
           LGLPN +  C+TCG+   K C+GH G +  P  I HPY ++ I +IL  ICP+CKS ++E
Sbjct: 199 LGLPNSSYGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILQKICPACKSIRQE 258

Query: 107 SRNKGSGRKPKMSNIASHQPMGCKYCAESSKKWYP 3
            R K    + K     ++QP GCKYC  +    YP
Sbjct: 259 IRVK----RAKSLLGYNNQPKGCKYCCGNGMGRYP 289


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 1475

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 34/62 (54%), Positives = 45/62 (72%)
 Frame = -2

Query: 287 LGLPNEASECSTCGATSAKDCDGHLGMLTLPKDICHPYNLSVIVKILNSICPSCKSNKKE 108
           LGLPN  ++CSTCG+   K C+GH G++  P  I HPY LS +V+ILN +CP CKS +KE
Sbjct: 49  LGLPNPTNQCSTCGSKDLKSCEGHFGVIKFPFTILHPYYLSEVVRILNQVCPKCKSIRKE 108

Query: 107 SR 102
           S+
Sbjct: 109 SK 110