BLASTX nr result

ID: Coptis23_contig00028772 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028772
         (295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004164563.1| PREDICTED: mitochondrial ubiquitin ligase ac...   103   1e-20
ref|XP_004136066.1| PREDICTED: mitochondrial ubiquitin ligase ac...   103   1e-20
ref|XP_002321058.1| predicted protein [Populus trichocarpa] gi|2...   102   2e-20
gb|ABK95241.1| unknown [Populus trichocarpa]                          102   2e-20
ref|XP_003591623.1| Baculoviral IAP repeat-containing protein [M...   101   6e-20

>ref|XP_004164563.1| PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-like
           [Cucumis sativus]
          Length = 337

 Score =  103 bits (258), Expect = 1e-20
 Identities = 50/77 (64%), Positives = 60/77 (77%)
 Frame = -1

Query: 295 MLGVTLIESLLPTGTALTVVGQAVKDDMGMIVIQRPQNGPYYVSRNSIDKLIENLGFQAR 116
           MLGV  IE +LPTGT+LTVVG+A KDD+G I IQRP  GP+YVS  +ID+LI NLG  AR
Sbjct: 162 MLGVKRIERVLPTGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTIDQLISNLGKWAR 221

Query: 115 WYKYVSMGLAVLALSLI 65
           WYKY SMGL++  L L+
Sbjct: 222 WYKYASMGLSIFGLYLV 238


>ref|XP_004136066.1| PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-like
           [Cucumis sativus]
          Length = 342

 Score =  103 bits (258), Expect = 1e-20
 Identities = 50/77 (64%), Positives = 60/77 (77%)
 Frame = -1

Query: 295 MLGVTLIESLLPTGTALTVVGQAVKDDMGMIVIQRPQNGPYYVSRNSIDKLIENLGFQAR 116
           MLGV  IE +LPTGT+LTVVG+A KDD+G I IQRP  GP+YVS  +ID+LI NLG  AR
Sbjct: 162 MLGVKRIERVLPTGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTIDQLISNLGKWAR 221

Query: 115 WYKYVSMGLAVLALSLI 65
           WYKY SMGL++  L L+
Sbjct: 222 WYKYASMGLSIFGLYLV 238


>ref|XP_002321058.1| predicted protein [Populus trichocarpa] gi|222861831|gb|EEE99373.1|
           predicted protein [Populus trichocarpa]
          Length = 335

 Score =  102 bits (255), Expect = 2e-20
 Identities = 51/77 (66%), Positives = 59/77 (76%)
 Frame = -1

Query: 295 MLGVTLIESLLPTGTALTVVGQAVKDDMGMIVIQRPQNGPYYVSRNSIDKLIENLGFQAR 116
           MLGV  IE +LPTGT+LTVVG+AVKDD+G + IQRP  GP+YVS  SID+LI NLG  AR
Sbjct: 160 MLGVKRIERVLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKSIDELIGNLGKWAR 219

Query: 115 WYKYVSMGLAVLALSLI 65
           WYKY S+GL V    LI
Sbjct: 220 WYKYASLGLTVFGAFLI 236


>gb|ABK95241.1| unknown [Populus trichocarpa]
          Length = 238

 Score =  102 bits (255), Expect = 2e-20
 Identities = 51/77 (66%), Positives = 59/77 (76%)
 Frame = -1

Query: 295 MLGVTLIESLLPTGTALTVVGQAVKDDMGMIVIQRPQNGPYYVSRNSIDKLIENLGFQAR 116
           MLGV  IE +LPTGT+LTVVG+AVKDD+G + IQRP  GP+YVS  SID+LI NLG  AR
Sbjct: 59  MLGVKRIERVLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKSIDELIGNLGKWAR 118

Query: 115 WYKYVSMGLAVLALSLI 65
           WYKY S+GL V    LI
Sbjct: 119 WYKYASLGLTVFGAFLI 135


>ref|XP_003591623.1| Baculoviral IAP repeat-containing protein [Medicago truncatula]
           gi|355480671|gb|AES61874.1| Baculoviral IAP
           repeat-containing protein [Medicago truncatula]
          Length = 344

 Score =  101 bits (252), Expect = 6e-20
 Identities = 53/87 (60%), Positives = 65/87 (74%)
 Frame = -1

Query: 295 MLGVTLIESLLPTGTALTVVGQAVKDDMGMIVIQRPQNGPYYVSRNSIDKLIENLGFQAR 116
           MLGV  IE +LP GT+LTVVG+A KDD+G I IQRP  GP+YVS  +ID+LI N+G  AR
Sbjct: 166 MLGVKRIERVLPVGTSLTVVGEAAKDDVGTIRIQRPSKGPFYVSPKTIDELIANIGRWAR 225

Query: 115 WYKYVSMGLAVLALSLIAAECAV*YII 35
           WYKY S GL VL++ +IA   AV YI+
Sbjct: 226 WYKYASAGLTVLSVYMIANH-AVRYIL 251


Top