BLASTX nr result

ID: Coptis23_contig00028750 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028750
         (723 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...    65   1e-08
ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...    63   5e-08
ref|XP_002319850.1| predicted protein [Populus trichocarpa] gi|2...    62   9e-08
ref|XP_003604531.1| hypothetical protein MTR_4g014190 [Medicago ...    62   1e-07
ref|XP_002317320.1| predicted protein [Populus trichocarpa] gi|2...    62   2e-07

>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
           predicted protein [Populus trichocarpa]
          Length = 1046

 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
 Frame = +2

Query: 350 VLSLTPLRSFSPIFNDGVAMV--PDELVDQGIQQWDDYLVGYFLDKRLSFPFVRDFLTKT 523
           + S+  L    P   DG   V  P ++ + G + W   LVG+F+ ++L +P V     + 
Sbjct: 119 ISSVRNLHFAPPTMTDGRVTVAPPLDVFEDGCEFWKSTLVGHFVGQKLPYPVVNSIAKRI 178

Query: 524 WKLKASFEI-TTDKELFYLSFTSNEDRQMVLESGSVFIAGRIFVLKPWSVEMDYQRSVLT 700
           W      E+ ++D   F  +F S +    VLE     +A R  VLK W   M + +  L 
Sbjct: 179 WSSYGLSEVLSSDNGFFIFNFDSVDHATNVLERAPWHMANRPLVLKRWQPNMQFLKDDLA 238

Query: 701 TVPVWV 718
           TVPVWV
Sbjct: 239 TVPVWV 244


>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
           predicted protein [Populus trichocarpa]
          Length = 1386

 Score = 63.2 bits (152), Expect = 5e-08
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
 Frame = +2

Query: 350 VLSLTPLRSFSPIFNDGVAMV--PDELVDQGIQQWDDYLVGYFLDKRLSFPFVRDFLTKT 523
           + S+  L    P   DG   V  P ++ + G + W   LVG+F+ ++L +P V     + 
Sbjct: 119 ISSVRNLHFAPPTTTDGRVTVAPPLDVFEDGCEFWKSTLVGHFVGQKLPYPVVNSIAKRI 178

Query: 524 WKLKASFEI-TTDKELFYLSFTSNEDRQMVLESGSVFIAGRIFVLKPWSVEMDYQRSVLT 700
           W      E+ ++D   F  +F S +    VLE     +A R  VLK W   M + +  L 
Sbjct: 179 WSSYGLSEVLSSDNGFFIFNFDSVDHATNVLERAPWHMANRPLVLKRWQPNMQFLKDDLA 238

Query: 701 TVPVWVK 721
            VPVWV+
Sbjct: 239 RVPVWVR 245


>ref|XP_002319850.1| predicted protein [Populus trichocarpa] gi|222858226|gb|EEE95773.1|
           predicted protein [Populus trichocarpa]
          Length = 809

 Score = 62.4 bits (150), Expect = 9e-08
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
 Frame = +2

Query: 350 VLSLTPLRSFSPIFNDGVAMV--PDELVDQGIQQWDDYLVGYFLDKRLSFPFVRDFLTKT 523
           + S+  L    P   DG   V  P ++ + G + W   LVG+F+ ++L +P V     + 
Sbjct: 119 ISSVRNLHFAPPTMTDGRVKVAPPLDVFEDGCEFWKSTLVGHFVGQKLPYPVVNSIAKRI 178

Query: 524 WKLKASFEI-TTDKELFYLSFTSNEDRQMVLESGSVFIAGRIFVLKPWSVEMDYQRSVLT 700
           W      E+ ++D   F  +F S +    VLE     +A R  VLK W   M + +    
Sbjct: 179 WSSYGLSEVLSSDNGFFIFNFDSVDHATNVLERAPWHMANRPLVLKRWQPNMQFLKDDFA 238

Query: 701 TVPVWVK 721
            VPVWV+
Sbjct: 239 RVPVWVR 245


>ref|XP_003604531.1| hypothetical protein MTR_4g014190 [Medicago truncatula]
           gi|355505586|gb|AES86728.1| hypothetical protein
           MTR_4g014190 [Medicago truncatula]
          Length = 382

 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
 Frame = +2

Query: 368 LRSFSPIFNDGV---AMVPDELVDQGIQQWDDYLVGYFLDKRLSFPFVRDFLTKTWKLKA 538
           L   +P+   G     +  D +V +   +W++ ++ Y +D   S  ++  F++K W   +
Sbjct: 101 LSYIAPVLKHGTPTACLNADAIVSEA-SKWENAIIMYVIDDCPSLKYINTFISKHWNCTS 159

Query: 539 SFEITTDKELFYL-SFTSNEDRQMVLESGSVFIAGRIFVLKPWSVEMDYQRSVLTTVPVW 715
             ++    E +Y+  F S +D+  VL +G   IA R  ++K W+ + D+Q+ +L  VP+W
Sbjct: 160 HPDVFYHNEGYYVVRFASLDDKNTVLCAGPYTIANRPVIVKSWAPDFDFQKEILKVVPLW 219

Query: 716 VK 721
           ++
Sbjct: 220 IQ 221


>ref|XP_002317320.1| predicted protein [Populus trichocarpa] gi|222860385|gb|EEE97932.1|
           predicted protein [Populus trichocarpa]
          Length = 761

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
 Frame = +2

Query: 350 VLSLTPLRSFSPIFNDGVAMV--PDELVDQGIQQWDDYLVGYFLDKRLSFPFVRDFLTKT 523
           + S+  L    P   DG   V  P ++ + G + W   LVG+F+ ++L +P V     + 
Sbjct: 119 ISSVRNLHFAPPTMTDGRVTVAPPLDVFEDGCEFWKSTLVGHFMGQKLPYPVVNSIAKRI 178

Query: 524 WKLKASFEI-TTDKELFYLSFTSNEDRQMVLESGSVFIAGRIFVLKPWSVEMDYQRSVLT 700
           W      E+ ++D   F  +F S +    VLE     +A    VLK W   M + +  L 
Sbjct: 179 WSSYGLLEVLSSDNGFFIFNFDSVDRATNVLERAPWHMANMPLVLKRWQPNMQFLKDDLA 238

Query: 701 TVPVWV 718
            VPVWV
Sbjct: 239 RVPVWV 244


Top