BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028739
         (315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269241.1| PREDICTED: F-box protein At5g07610 [Vitis vi...    93   3e-17
ref|XP_002267226.1| PREDICTED: F-box protein At5g07610 [Vitis vi...    91   1e-16
ref|XP_004158152.1| PREDICTED: F-box protein At5g07610-like [Cuc...    84   2e-14
ref|XP_004143739.1| PREDICTED: F-box protein At5g07610-like [Cuc...    84   2e-14
ref|XP_002871279.1| F box protein family [Arabidopsis lyrata sub...    78   6e-13

>ref|XP_002269241.1| PREDICTED: F-box protein At5g07610 [Vitis vinifera]
           gi|297743579|emb|CBI36446.3| unnamed protein product
           [Vitis vinifera]
          Length = 374

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 52/101 (51%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
 Frame = -3

Query: 313 ILQSCNGLLCCSS--FRTNSKTYYIYNPTTKQYTILPKACSVPGSNRGFICSVSLAFNPL 140
           ILQSCNGL CCSS  +  + + YYIYNPTTKQ+T LP  C   G +   +  V+LAF+P 
Sbjct: 98  ILQSCNGLFCCSSVDYNDSERKYYIYNPTTKQFTTLPPLC---GRSVRRVLGVNLAFDPS 154

Query: 139 KSPDYKVVCMQNIGSD-DEYQISIYSSNTSSWRFVGGTFTA 20
           KS  YKVVC+Q   S  D  QI I S  T  WR  G  F A
Sbjct: 155 KSHTYKVVCVQRCKSSYDHCQIQISSLETGPWRVSGVPFAA 195


>ref|XP_002267226.1| PREDICTED: F-box protein At5g07610 [Vitis vinifera]
           gi|296090309|emb|CBI40128.3| unnamed protein product
           [Vitis vinifera]
          Length = 415

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 47/101 (46%), Positives = 64/101 (63%), Gaps = 3/101 (2%)
 Frame = -3

Query: 313 ILQSCNGLLCCSSFRT--NSKTYYIYNPTTKQYTILPKACSVPGSNRGFICSVSLAFNPL 140
           +LQ CNGLLCCS+ R+   S+ YYI N  T+++++LP  CS  G  R  +  ++LAF+P 
Sbjct: 123 VLQVCNGLLCCSTVRSLGTSRNYYICNLATRRFSVLPPPCSSGG--RDTVFGINLAFDPS 180

Query: 139 KSPDYKVVCMQNIG-SDDEYQISIYSSNTSSWRFVGGTFTA 20
           KSP Y V+C+++   S   YQI IYSS T  WR  G  F A
Sbjct: 181 KSPYYSVICVRSCEVSISHYQIEIYSSGTGDWRLSGKPFRA 221


>ref|XP_004158152.1| PREDICTED: F-box protein At5g07610-like [Cucumis sativus]
          Length = 393

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
 Frame = -3

Query: 313 ILQSCNGLLCCSSFRTNSKT--YYIYNPTTKQYTILPKACSVPGSNRGFICSVSLAFNPL 140
           ILQSCNGL  CS++  N  T  +YI+NPTT  +T LP          G +  ++LAF+PL
Sbjct: 111 ILQSCNGLFLCSTYNGNYSTRDFYIHNPTTNHHTKLPYL------QVGAVFGLNLAFDPL 164

Query: 139 KSPDYKVVCMQ-NIGSDDEYQISIYSSNTSSWRFVGGTFTA 20
           +S DYKV+C++ +    D +QI +YSS T  WR V G F+A
Sbjct: 165 RSSDYKVICVRYSDAYTDTFQIEMYSSVTGPWRPVQGVFSA 205


>ref|XP_004143739.1| PREDICTED: F-box protein At5g07610-like [Cucumis sativus]
          Length = 393

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
 Frame = -3

Query: 313 ILQSCNGLLCCSSFRTNSKT--YYIYNPTTKQYTILPKACSVPGSNRGFICSVSLAFNPL 140
           ILQSCNGL  CS++  N  T  +YI+NPTT  +T LP          G +  ++LAF+PL
Sbjct: 111 ILQSCNGLFLCSTYNGNYSTRDFYIHNPTTNHHTKLPYL------QVGAVFGLNLAFDPL 164

Query: 139 KSPDYKVVCMQ-NIGSDDEYQISIYSSNTSSWRFVGGTFTA 20
           +S DYKV+C++ +    D +QI +YSS T  WR V G F+A
Sbjct: 165 RSSDYKVICVRYSDAYTDTFQIEMYSSVTGPWRPVQGVFSA 205


>ref|XP_002871279.1| F box protein family [Arabidopsis lyrata subsp. lyrata]
           gi|34013883|gb|AAQ56109.1| F box protein family
           [Arabidopsis lyrata subsp. lyrata]
           gi|297317116|gb|EFH47538.1| F box protein family
           [Arabidopsis lyrata subsp. lyrata]
          Length = 421

 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 51/113 (45%), Positives = 64/113 (56%), Gaps = 15/113 (13%)
 Frame = -3

Query: 313 ILQSCNGLLCC-------SSFRTNSKTYYIYNPTTKQYTILPKACSVPGSNRGFICSVSL 155
           I+QS NGLL C       + F TN   YY+YNPTTKQYT+LP+         G I ++SL
Sbjct: 128 IMQSTNGLLLCQCSCASSNHFNTN---YYVYNPTTKQYTLLPQI-------TGHI-ALSL 176

Query: 154 AFNPLKSPDYKVVCMQ-------NIGSDDE-YQISIYSSNTSSWRFVGGTFTA 20
           AF+P KSP YKV C++       +  SD E Y I +YSSN   WR V    T+
Sbjct: 177 AFDPSKSPHYKVFCLRGRSNNSVSSASDSELYHIEVYSSNEGLWRRVDPALTS 229