BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028728
         (236 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containi...    92   4e-17
ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containi...    92   4e-17
emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]    89   3e-16
emb|CBI39775.3| unnamed protein product [Vitis vinifera]               88   8e-16
ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containi...    88   8e-16

>ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 45/78 (57%), Positives = 60/78 (76%)
 Frame = -1

Query: 236 HILKTNKPLSTLPLNRVASICALSPTNFPYAHSIFERVNNTSVNVIWNNCLKAFAEGDCP 57
           H+LKTN PLS+LPL+RVAS+CA + ++F YA  IF+ ++ + V   WN CL++FAEGD P
Sbjct: 37  HLLKTNSPLSSLPLSRVASVCAFN-SSFSYAKLIFQLLDASEVTH-WNTCLRSFAEGDSP 94

Query: 56  IDALRLFYRLRYFNIMPD 3
            DA+ LFYRLR F+I PD
Sbjct: 95  ADAISLFYRLREFDISPD 112


>ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 45/78 (57%), Positives = 60/78 (76%)
 Frame = -1

Query: 236 HILKTNKPLSTLPLNRVASICALSPTNFPYAHSIFERVNNTSVNVIWNNCLKAFAEGDCP 57
           H+LKTN PLS+LPL+RVAS+CA + ++F YA  IF+ ++ + V   WN CL++FAEGD P
Sbjct: 37  HLLKTNSPLSSLPLSRVASVCAFN-SSFSYAKLIFQLLDASEVTH-WNTCLRSFAEGDSP 94

Query: 56  IDALRLFYRLRYFNIMPD 3
            DA+ LFYRLR F+I PD
Sbjct: 95  ADAISLFYRLREFDISPD 112


>emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 44/78 (56%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
 Frame = -1

Query: 233 ILKTNKPLSTLPLNRVASICALSPTNFPYAHSIFERVNNTSVNV-IWNNCLKAFAEGDCP 57
           I+KTN PLS LPL RV  +CA +P+ F YA  IFE V        +WN+CLKA AEGD P
Sbjct: 51  IIKTNAPLSILPLTRVGLVCAFTPS-FHYAQQIFECVEKQKPETFVWNSCLKALAEGDSP 109

Query: 56  IDALRLFYRLRYFNIMPD 3
           IDA+ LFYRLR +++ PD
Sbjct: 110 IDAIMLFYRLRQYDVCPD 127


>emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 43/78 (55%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
 Frame = -1

Query: 233 ILKTNKPLSTLPLNRVASICALSPTNFPYAHSIFERVNNTSVNV-IWNNCLKAFAEGDCP 57
           I+KTN PLS LPL RV  +CA +P+ F YA  IF+ V        +WN+CLKA AEGD P
Sbjct: 84  IIKTNAPLSILPLTRVGLVCAFTPS-FHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSP 142

Query: 56  IDALRLFYRLRYFNIMPD 3
           IDA+ LFYRLR +++ PD
Sbjct: 143 IDAIMLFYRLRQYDVCPD 160


>ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 43/78 (55%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
 Frame = -1

Query: 233 ILKTNKPLSTLPLNRVASICALSPTNFPYAHSIFERVNNTSVNV-IWNNCLKAFAEGDCP 57
           I+KTN PLS LPL RV  +CA +P+ F YA  IF+ V        +WN+CLKA AEGD P
Sbjct: 51  IIKTNAPLSILPLTRVGLVCAFTPS-FHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSP 109

Query: 56  IDALRLFYRLRYFNIMPD 3
           IDA+ LFYRLR +++ PD
Sbjct: 110 IDAIMLFYRLRQYDVCPD 127