BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028720
         (647 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   115   5e-24
ref|XP_002333134.1| predicted protein [Populus trichocarpa] gi|2...   108   1e-21
ref|XP_002331841.1| predicted protein [Populus trichocarpa] gi|2...   102   8e-20
ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,...    98   1e-18
ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,...    98   1e-18

>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|302143685|emb|CBI22546.3| unnamed protein product
           [Vitis vinifera]
          Length = 518

 Score =  115 bits (289), Expect = 5e-24
 Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 6/158 (3%)
 Frame = +3

Query: 189 PLGLSSRFSINRSPFKGPVFLAFKTDKTENRSLVTSHETTSL---STKSHRVQKRLKKAI 359
           P GL+++FS +++P + P+ LAFK DK +N +LVT HE   L   ++K H+  KRL++A 
Sbjct: 16  PFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIETSKDHK--KRLRRAS 73

Query: 360 KSSKIVKTVSIDE--PCALDVDYSEAAEKLENIYKLSPAKVIS-XXXXXXXXXXXXXXXX 530
           K SK VK VS DE  PC++++DY+EAA KLENIYKLSPA  +S                 
Sbjct: 74  KPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAEDLERVVRRGRQRRK 133

Query: 531 XXXXGNEKPEKEPSDIVVKNNKKTAKRLGLDKRIELRR 644
                ++K EKE SD VV+ + K  KRL L+KRI L +
Sbjct: 134 RVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSK 171


>ref|XP_002333134.1| predicted protein [Populus trichocarpa] gi|222834948|gb|EEE73397.1|
           predicted protein [Populus trichocarpa]
          Length = 512

 Score =  108 bits (269), Expect = 1e-21
 Identities = 68/155 (43%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
 Frame = +3

Query: 189 PLGLSSRFSINRSPFKGPVFLAFKTDKTENRSLVTSHETTSLSTKSHRVQKRLKKAIKSS 368
           PLGLS++FS   S  K P+ +AFK DK+ N SLV  HE   L  ++ + +KRL K+ KSS
Sbjct: 14  PLGLSTKFSTYGSTAKRPLIVAFKADKSNNTSLVAPHEQIPLPVETTKGKKRLGKSKKSS 73

Query: 369 KIVKTVSID-EPCALDVDYSEAAEKLENIYKLSPAKVIS-XXXXXXXXXXXXXXXXXXXX 542
             +K V  +  PC L VDY+EAA KLENIYKLSP    S                     
Sbjct: 74  NRLKAVRTEVSPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDASGVIRRGRQRKRKISE 133

Query: 543 GNEKPEKEPSDIVVKNNKKTAKRLGLDKRIELRRK 647
           G ++ E     I+V+N  K AKRL L+KRI LR K
Sbjct: 134 GGKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIK 168


>ref|XP_002331841.1| predicted protein [Populus trichocarpa] gi|222875079|gb|EEF12210.1|
           predicted protein [Populus trichocarpa]
          Length = 512

 Score =  102 bits (253), Expect = 8e-20
 Identities = 66/155 (42%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
 Frame = +3

Query: 189 PLGLSSRFSINRSPFKGPVFLAFKTDKTENRSLVTSHETTSLSTKSHRVQKRLKKAIKSS 368
           PLG S++FS  RS  K P+ +AFK DK+   +LV  HE   L  ++ + +KR  K+ KSS
Sbjct: 14  PLGFSTKFSTCRSTAKRPLIVAFKADKSNETALVAPHEQIPLPIETTKEKKRRGKSKKSS 73

Query: 369 KIVKTVSID-EPCALDVDYSEAAEKLENIYKLSPAKVISXXXXXXXXXXXXXXXXXXXXG 545
             +K V  +  PC L VDY+EAA KLENIYKLSP    S                     
Sbjct: 74  DRLKAVRTEVSPCTLGVDYNEAAAKLENIYKLSPGTDTSDVEDVNGVIRRCRQRKRKTSE 133

Query: 546 NEKPEK-EPSDIVVKNNKKTAKRLGLDKRIELRRK 647
            EK +    S I+V+N  K AKRL L KRI LR K
Sbjct: 134 CEKEDDGRTSKIIVRNQAKKAKRLSLQKRIALRIK 168


>ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 515

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
 Frame = +3

Query: 189 PLGLSSRFSINRSPFKGPVFLAFKTDKTENRSLVTSHETTSLSTKSH-RVQKRLKKAIKS 365
           P  L  +FS + S  K P  +AFK DK  N +LV+ HE  +L  +S+ R +KR     K 
Sbjct: 14  PFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNNRRKKRSGNTSKP 73

Query: 366 SKIVKTVSIDE--PCALDVDYSEAAEKLENIYKLSPAKVISXXXXXXXXXXXXXXXXXXX 539
            K VK V IDE  PC+LD+DY+EAA KLENI+KLSP    S                   
Sbjct: 74  LKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKDGRSKRGQKR---- 129

Query: 540 XGNEKPEKEPSDIVVKNNKKTAKRLGLDKRIELRRK 647
             ++K    P D +V+N  K  KRL LDKRI L+ K
Sbjct: 130 --SKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNK 163


>ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 514

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
 Frame = +3

Query: 189 PLGLSSRFSINRSPFKGPVFLAFKTDKTENRSLVTSHETTSLSTKSH-RVQKRLKKAIKS 365
           P  L  +FS + S  K P  +AFK DK  N +LV+ HE  +L  +S+ R +KR     K 
Sbjct: 14  PFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNNRRKKRSGNTSKP 73

Query: 366 SKIVKTVSIDE--PCALDVDYSEAAEKLENIYKLSPAKVISXXXXXXXXXXXXXXXXXXX 539
            K VK V IDE  PC+LD+DY+EAA KLENI+KLSP    S                   
Sbjct: 74  LKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKDGRSKRGQKR---- 129

Query: 540 XGNEKPEKEPSDIVVKNNKKTAKRLGLDKRIELRRK 647
             ++K    P D +V+N  K  KRL LDKRI L+ K
Sbjct: 130 --SKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNK 163