BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028667
         (346 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003548551.1| PREDICTED: pentatricopeptide repeat-containi...   158   5e-37
ref|XP_002324000.1| predicted protein [Populus trichocarpa] gi|2...   156   2e-36
ref|XP_002526948.1| pentatricopeptide repeat-containing protein,...   153   1e-35
ref|XP_002268821.1| PREDICTED: pentatricopeptide repeat-containi...   149   3e-34
ref|XP_002873660.1| pentatricopeptide repeat-containing protein ...   147   1e-33

>ref|XP_003548551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g46610-like [Glycine max]
          Length = 808

 Score =  158 bits (399), Expect = 5e-37
 Identities = 76/114 (66%), Positives = 93/114 (81%)
 Frame = +1

Query: 1   TILASIYVGQGKFEMVESVITEMVDSGVEPTVITYNAIISGCAHNGMGTSAFEWFDRLKG 180
           TI+ASI+  QG F  V+++I EMV  G+E TV+TYNAII+GCAHNGM + A+EWF R+K 
Sbjct: 638 TIMASIHTAQGNFNRVDAIIQEMVTLGIEVTVVTYNAIITGCAHNGMSSVAYEWFHRMKV 697

Query: 181 KNISPNEITYEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAKA 342
           +NISPNEITYEMLI+AL  D KP LAY++Y RA NEGL LSSKAYDAVV S++A
Sbjct: 698 QNISPNEITYEMLIVALANDGKPRLAYQLYTRAKNEGLTLSSKAYDAVVQSSQA 751


>ref|XP_002324000.1| predicted protein [Populus trichocarpa] gi|222867002|gb|EEF04133.1|
           predicted protein [Populus trichocarpa]
          Length = 709

 Score =  156 bits (394), Expect = 2e-36
 Identities = 71/115 (61%), Positives = 96/115 (83%)
 Frame = +1

Query: 1   TILASIYVGQGKFEMVESVITEMVDSGVEPTVITYNAIISGCAHNGMGTSAFEWFDRLKG 180
           TI+AS++  QG F +V+++I EMV +G+EPTV+TYNAIISGCA N + ++A+EWF R+K 
Sbjct: 541 TIMASVFTRQGNFRLVDAIINEMVSTGIEPTVVTYNAIISGCARNNLSSAAYEWFHRMKV 600

Query: 181 KNISPNEITYEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAKAF 345
           +NISPNEITY+MLI AL +  KP LAYE+YLRA NE L+LS KAYDAV++S++A+
Sbjct: 601 QNISPNEITYDMLIEALAKSGKPRLAYELYLRAQNEDLQLSPKAYDAVMHSSEAY 655


>ref|XP_002526948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533700|gb|EEF35435.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 671

 Score =  153 bits (387), Expect = 1e-35
 Identities = 70/115 (60%), Positives = 94/115 (81%)
 Frame = +1

Query: 1   TILASIYVGQGKFEMVESVITEMVDSGVEPTVITYNAIISGCAHNGMGTSAFEWFDRLKG 180
           TI+AS++ GQGKF  V+++I +MV SG+EPT+ITYNAIISGC HN + ++A+EWF R+K 
Sbjct: 501 TIMASVFAGQGKFTYVDAIIQKMVSSGIEPTIITYNAIISGCTHNNLSSAAYEWFHRMKV 560

Query: 181 KNISPNEITYEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAKAF 345
           +N+ PN+ITYEMLI AL +D KP LAYE+YLRA  EGL LS+K YDAV+ S++ +
Sbjct: 561 QNMPPNKITYEMLIEALAKDGKPRLAYELYLRAKYEGLDLSAKVYDAVLRSSQVY 615


>ref|XP_002268821.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46610
           [Vitis vinifera]
          Length = 763

 Score =  149 bits (375), Expect = 3e-34
 Identities = 72/113 (63%), Positives = 90/113 (79%)
 Frame = +1

Query: 1   TILASIYVGQGKFEMVESVITEMVDSGVEPTVITYNAIISGCAHNGMGTSAFEWFDRLKG 180
           TI+ASI VGQGK + V+S++ EM   G++ TV+TYNAIISGCA NG+ ++AFEWF R+K 
Sbjct: 593 TIMASICVGQGKLQRVDSILREMETLGIDATVVTYNAIISGCARNGLSSAAFEWFHRMKV 652

Query: 181 KNISPNEITYEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAK 339
             I PNEITYEMLI AL +D KP LA+E+Y RA NEGL LS+KAYDAVV S++
Sbjct: 653 GKIQPNEITYEMLIEALAKDGKPRLAFELYSRAQNEGLNLSTKAYDAVVLSSQ 705


>ref|XP_002873660.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297319497|gb|EFH49919.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 674

 Score =  147 bits (370), Expect = 1e-33
 Identities = 65/115 (56%), Positives = 91/115 (79%)
 Frame = +1

Query: 1   TILASIYVGQGKFEMVESVITEMVDSGVEPTVITYNAIISGCAHNGMGTSAFEWFDRLKG 180
           T +AS+  GQ KF ++++++ EM   G+EP+V+TYNA+ISGCA NG+   A+EWF R++G
Sbjct: 541 TTMASVLTGQQKFNLLDTLLKEMASKGIEPSVVTYNAVISGCARNGLSGVAYEWFHRMRG 600

Query: 181 KNISPNEITYEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAKAF 345
           + + PNEITYEMLI AL  D+KP LAYE++L+A N+GL+LSSK YDAVV SA+ +
Sbjct: 601 EKVEPNEITYEMLIEALANDAKPRLAYELHLKAQNDGLKLSSKPYDAVVKSAETY 655