BLASTX nr result
ID: Coptis23_contig00028660
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00028660
(495 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containi... 136 2e-39
ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containi... 130 3e-38
ref|XP_002515124.1| pentatricopeptide repeat-containing protein,... 134 3e-37
ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|2... 134 3e-37
ref|XP_002874971.1| pentatricopeptide repeat-containing protein ... 112 2e-29
>ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g01570-like [Cucumis sativus]
gi|449523383|ref|XP_004168703.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g01570-like [Cucumis sativus]
Length = 803
Score = 136 bits (342), Expect(2) = 2e-39
Identities = 69/110 (62%), Positives = 85/110 (77%)
Frame = -3
Query: 487 IDFFK*ASLRHNYKHSVDTYGEIFLYVCRAGCFNEIRPLIELMKGDGLVVDSVTFKVLLD 308
+DFFK SL N+ HS TY +IF +CR+G +E+ PL++ MK DG+ VDS TFKVLLD
Sbjct: 74 LDFFKWCSLAPNFNHSPSTYSQIFHILCRSGYLHEVPPLLDSMKRDGVSVDSHTFKVLLD 133
Query: 307 AFIRLGKFDLAIEILDDMEELGTSLSPYMYNSVIVALVRKNQIELALSIF 158
AFIR GK+D A+EILD ME+LGTSL YNSV+VAL+RKNQ+ LALSIF
Sbjct: 134 AFIRSGKYDAALEILDHMEDLGTSLELNTYNSVLVALLRKNQVGLALSIF 183
Score = 51.2 bits (121), Expect(2) = 2e-39
Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 10/60 (16%)
Frame = -2
Query: 161 FLKLLQALNGDGCV----------VNALSCNELFVALRKADMKEDFKSVFEKLREKEGIE 12
F KLL N G V N+L+CNEL VALRK DM+ +FK VF+KLR E E
Sbjct: 183 FFKLLDGFNNGGQVDSAATTFHFLPNSLACNELLVALRKLDMRVEFKKVFDKLRAIESFE 242
>ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
[Vitis vinifera]
Length = 792
Score = 130 bits (326), Expect(2) = 3e-38
Identities = 65/114 (57%), Positives = 84/114 (73%), Gaps = 2/114 (1%)
Frame = -3
Query: 493 RNIDFFK*ASLRHNYKHSVDTYGEIFLYVCRAGC--FNEIRPLIELMKGDGLVVDSVTFK 320
R ++FF+ S RHNYKHSV Y IF VCRAG +++ L+ MK DG+VV TFK
Sbjct: 65 RKVEFFRWCSFRHNYKHSVGAYSHIFRIVCRAGAEFLDQVPLLMSSMKDDGVVVGQETFK 124
Query: 319 VLLDAFIRLGKFDLAIEILDDMEELGTSLSPYMYNSVIVALVRKNQIELALSIF 158
+LLD+ IR GKFD A+EILD +EELGT L+ Y+Y+SV+VAL+RKNQ+ LAL +F
Sbjct: 125 LLLDSLIRAGKFDSALEILDHIEELGTGLNSYVYDSVLVALIRKNQLGLALPLF 178
Score = 53.5 bits (127), Expect(2) = 3e-38
Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Frame = -2
Query: 161 FLKLLQALNGDGCVV--NALSCNELFVALRKADMKEDFKSVFEKLREKEGIELDS 3
F KLL G G V + +CN+L VALRKADMK +F++VFEKLR K+ +LD+
Sbjct: 178 FFKLLGGDEGQGGVPVPESNACNQLLVALRKADMKIEFRNVFEKLRAKKDFDLDT 232
>ref|XP_002515124.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545604|gb|EEF47108.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 898
Score = 134 bits (337), Expect(2) = 3e-37
Identities = 67/112 (59%), Positives = 81/112 (72%)
Frame = -3
Query: 493 RNIDFFK*ASLRHNYKHSVDTYGEIFLYVCRAGCFNEIRPLIELMKGDGLVVDSVTFKVL 314
+ I+FFK S HNYKHS Y +F VC AG F E+R L+ MK D +V + TFK L
Sbjct: 95 KKIEFFKWCSFSHNYKHSACVYSHMFRTVCNAGYFEEVRSLLNSMKDDCAIVGTGTFKFL 154
Query: 313 LDAFIRLGKFDLAIEILDDMEELGTSLSPYMYNSVIVALVRKNQIELALSIF 158
LD FI LG FD A+E+LD MEELGT+L+P+MY+SV+VAL RKNQI LALSIF
Sbjct: 155 LDTFINLGNFDFALELLDVMEELGTNLNPHMYDSVLVALTRKNQIGLALSIF 206
Score = 46.2 bits (108), Expect(2) = 3e-37
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Frame = -2
Query: 161 FLKLLQALNGDGCVVN---ALSCNELFVALRKADMKEDFKSVFEKLREKEGIELDS 3
F KLL+ N V+ +++CN L VALRKADM+ +FK VF+KL+ G ELD+
Sbjct: 206 FFKLLETSNDIDIGVSVPGSVACNTLLVALRKADMRVEFKKVFDKLKGM-GFELDT 260
>ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|222872045|gb|EEF09176.1|
predicted protein [Populus trichocarpa]
Length = 513
Score = 134 bits (338), Expect(2) = 3e-37
Identities = 65/111 (58%), Positives = 87/111 (78%)
Frame = -3
Query: 493 RNIDFFK*ASLRHNYKHSVDTYGEIFLYVCRAGCFNEIRPLIELMKGDGLVVDSVTFKVL 314
+ ++FFK S+RH YKHSV TY ++F +CR+G E+ L+ MK DG+VV S TFK+L
Sbjct: 47 KKMEFFKWCSVRHIYKHSVSTYSQMFSTLCRSGYLEEVPDLLNSMKNDGVVVGSETFKLL 106
Query: 313 LDAFIRLGKFDLAIEILDDMEELGTSLSPYMYNSVIVALVRKNQIELALSI 161
LDAFIR GKFD A++ILD MEELG++ +P+MY+S+IVAL +KNQ+ LALSI
Sbjct: 107 LDAFIRSGKFDSALDILDHMEELGSNPNPHMYDSIIVALAKKNQVGLALSI 157
Score = 45.8 bits (107), Expect(2) = 3e-37
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 6/57 (10%)
Frame = -2
Query: 155 KLLQALNGDG------CVVNALSCNELFVALRKADMKEDFKSVFEKLREKEGIELDS 3
KLL+A +G+ + +++CN L VALR +MK +FK+VF KLR K G EL++
Sbjct: 160 KLLEASDGNEENAVGVSLPGSVACNALLVALRNGEMKVEFKTVFAKLRGKVGFELNT 216
>ref|XP_002874971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297320808|gb|EFH51230.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 802
Score = 112 bits (280), Expect(2) = 2e-29
Identities = 57/113 (50%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Frame = -3
Query: 493 RNIDFFK*A-SLRHNYKHSVDTYGEIFLYVCRAGCFNEIRPLIELMKGDGLVVDSVTFKV 317
+ +DFF+ SLR YKHSV Y +IF VCR G E+ L+ MK DG+ +D K+
Sbjct: 73 KKLDFFRWCYSLRTGYKHSVSAYSQIFRTVCRTGLLGEVPDLLCSMKEDGVNLDQTMAKI 132
Query: 316 LLDAFIRLGKFDLAIEILDDMEELGTSLSPYMYNSVIVALVRKNQIELALSIF 158
LLD+ IR GKF+ A+ +LD MEELG L+P +Y+SV++AL +KN++ LALSIF
Sbjct: 133 LLDSLIRSGKFESALGVLDYMEELGDCLNPSLYDSVLIALAKKNELRLALSIF 185
Score = 41.6 bits (96), Expect(2) = 2e-29
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
Frame = -2
Query: 161 FLKLLQALNGDG---------CVVNALSCNELFVALRKADMKEDFKSVFEKLREKEGIEL 9
F KLL+A + G + ++ NEL V LR+ADM+ +FK+VFEKL+ +
Sbjct: 185 FFKLLEASDNHGDDTSGVTVSYLPGRVAVNELLVGLRRADMRSEFKTVFEKLKGMNRFKF 244
Query: 8 DS 3
D+
Sbjct: 245 DT 246