BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028639
         (365 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containi...    96   3e-18
ref|XP_002881503.1| pentatricopeptide repeat-containing protein ...    86   4e-15
ref|NP_181268.1| pentatricopeptide repeat-containing protein [Ar...    86   4e-15
ref|XP_002525211.1| pentatricopeptide repeat-containing protein,...    82   4e-14
ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containi...    82   6e-14

>ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 50/82 (60%), Positives = 60/82 (73%)
 Frame = -1

Query: 365 YSQAGRWEEAEKVREKMKNMGLKKAPGCSWIETSGGVVSFIAGNGSNPMMEEIFVVLEIL 186
           YSQAGRWEEAE +REKMK +GLKK PG SWIETSGG+ SFIA + S+   EEI+ +LE L
Sbjct: 586 YSQAGRWEEAENIREKMKKIGLKKIPGTSWIETSGGLRSFIARDVSSERSEEIYGMLEGL 645

Query: 185 VQMMGKESYVGIVELDEESVCI 120
           + +M +E Y    ELDEE   I
Sbjct: 646 LGLMREEGYTLQDELDEECAYI 667


>ref|XP_002881503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297327342|gb|EFH57762.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 669

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 42/77 (54%), Positives = 56/77 (72%)
 Frame = -1

Query: 365 YSQAGRWEEAEKVREKMKNMGLKKAPGCSWIETSGGVVSFIAGNGSNPMMEEIFVVLEIL 186
           Y+QAGRWEEAE VR+KMK +GLKK PG SWIET+ G+ SFIA + S    +E++ ++E L
Sbjct: 579 YTQAGRWEEAEVVRDKMKRIGLKKIPGTSWIETNKGLRSFIAKDSSCERSKEMYDIIEGL 638

Query: 185 VQMMGKESYVGIVELDE 135
           V+ M  + Y+   ELDE
Sbjct: 639 VESMSDKEYIMKQELDE 655


>ref|NP_181268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216848|sp|Q9ZUT5.1|PP191_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g37310 gi|4056485|gb|AAC98051.1| hypothetical protein
           [Arabidopsis thaliana] gi|110741249|dbj|BAF02175.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|330254288|gb|AEC09382.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 42/77 (54%), Positives = 54/77 (70%)
 Frame = -1

Query: 365 YSQAGRWEEAEKVREKMKNMGLKKAPGCSWIETSGGVVSFIAGNGSNPMMEEIFVVLEIL 186
           Y+QAGRWEEAE VR KMK +GLKK PG SWIET  G+ SFIA + S    +E++ ++E L
Sbjct: 579 YTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEKGLRSFIAKDSSCERSKEMYEIIEGL 638

Query: 185 VQMMGKESYVGIVELDE 135
           V+ M  + Y+   ELDE
Sbjct: 639 VESMSDKEYIRKQELDE 655


>ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535508|gb|EEF37177.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 654

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 43/80 (53%), Positives = 57/80 (71%)
 Frame = -1

Query: 365 YSQAGRWEEAEKVREKMKNMGLKKAPGCSWIETSGGVVSFIAGNGSNPMMEEIFVVLEIL 186
           YSQAGRW+EA++VRE+M  +GL+K PG SWIETS G+ SFIA +     +EEI V+L+ L
Sbjct: 573 YSQAGRWKEADEVRERMNKVGLQKIPGSSWIETSEGLRSFIATDTCTENVEEIHVILKGL 632

Query: 185 VQMMGKESYVGIVELDEESV 126
           + +M  E  V    LDEES+
Sbjct: 633 LGLMRDEGKVLQDMLDEESI 652


>ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 42/80 (52%), Positives = 59/80 (73%)
 Frame = -1

Query: 365 YSQAGRWEEAEKVREKMKNMGLKKAPGCSWIETSGGVVSFIAGNGSNPMMEEIFVVLEIL 186
           Y+ AG+WE+A +VRE+MK +GL+K  G SWIETSGG++SFIA + SN   +EI+ +LE L
Sbjct: 586 YAHAGKWEQAGEVRERMKVIGLQKIRGSSWIETSGGLLSFIAKDVSNGRSDEIYALLEGL 645

Query: 185 VQMMGKESYVGIVELDEESV 126
           + +M +E  V   ELD E+V
Sbjct: 646 LGLMREEGCVLQEELDYENV 665