BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028603
         (630 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311390.1| predicted protein [Populus trichocarpa] gi|2...   295   5e-78
ref|NP_193619.1| pentatricopeptide repeat-containing protein [Ar...   177   1e-42
ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containi...   174   2e-41
ref|XP_002867972.1| pentatricopeptide repeat-containing protein ...   173   3e-41
ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cuc...   169   4e-40

>ref|XP_002311390.1| predicted protein [Populus trichocarpa] gi|222851210|gb|EEE88757.1|
           predicted protein [Populus trichocarpa]
          Length = 594

 Score =  295 bits (755), Expect = 5e-78
 Identities = 140/209 (66%), Positives = 173/209 (82%)
 Frame = +2

Query: 2   VCEEECVLYPDDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSWNSLMDFYVKS 181
           +C++  V YP+DFTFT+VF+ACSK  GVFEGKQAHAQM+K P +FG HSWNSL+DFY K 
Sbjct: 125 LCDQRYV-YPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKV 183

Query: 182 GEMVSVVRRVFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEMPCRDTVSWTMILVGC 361
           GE+  VVRRVFD IE PD+VSWN L++GYVKSG +DE  R+FDEMP RD VSWT++LVG 
Sbjct: 184 GEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGY 243

Query: 362 VNAGLLSEARYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGVLADKVMLT 541
            +AG LSEA  +FDEMP+RN+VSWSA+I GY++ GC+ +AL LFKEMQV  V  D+V++T
Sbjct: 244 ADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVT 303

Query: 542 SVLSACASLGALDQGCWIHSYIDKHGIEV 628
           ++LSACA LGALDQG W+H YIDKHGI+V
Sbjct: 304 TLLSACARLGALDQGRWLHMYIDKHGIKV 332



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 6/182 (3%)
 Frame = +2

Query: 32  DDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSWNSLMDFYVKSGEMVSVVRRV 211
           D+   T + +AC++L  + +G+  H  + K  +K   H   +L+D Y K G  + +  +V
Sbjct: 298 DEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGR-IDMAWKV 356

Query: 212 FDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEM-PC---RDTVSWTMILVGCVNAGLL 379
           F    +  +  W+S++ G       ++   +F +M  C      +++  IL  C ++GL+
Sbjct: 357 FQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLV 416

Query: 380 SEARYVFDEMPERNVVSWSAMISGYVKDGCWKEAL--GLFKEMQVVGVLADKVMLTSVLS 553
                +F+ M E           G + D   +  L    F+ ++ + V AD  +  ++LS
Sbjct: 417 DVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLS 476

Query: 554 AC 559
           AC
Sbjct: 477 AC 478


>ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75098703|sp|O49399.2|PP321_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g18840 gi|5738365|emb|CAA16741.2| putative protein
           [Arabidopsis thaliana] gi|7268678|emb|CAB78886.1|
           putative protein [Arabidopsis thaliana]
           gi|332658697|gb|AEE84097.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 545

 Score =  177 bits (450), Expect = 1e-42
 Identities = 92/203 (45%), Positives = 125/203 (61%), Gaps = 1/203 (0%)
 Frame = +2

Query: 23  LYPDDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSWNSLMDFYVKSGEMVSVV 202
           ++PD ++FTFV  AC+   G  EG+Q H   +K  +       N+L++ Y +SG    + 
Sbjct: 136 VFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYF-EIA 194

Query: 203 RRVFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEMPCRDTVSWTMILVGCVNAGLLS 382
           R+V D +   D VSWNSLL  Y++ G VDE   +FDEM  R+  SW  ++ G   AGL+ 
Sbjct: 195 RKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVK 254

Query: 383 EARYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGV-LADKVMLTSVLSAC 559
           EA+ VFD MP R+VVSW+AM++ Y   GC+ E L +F +M        D   L SVLSAC
Sbjct: 255 EAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSAC 314

Query: 560 ASLGALDQGCWIHSYIDKHGIEV 628
           ASLG+L QG W+H YIDKHGIE+
Sbjct: 315 ASLGSLSQGEWVHVYIDKHGIEI 337



 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 11/196 (5%)
 Frame = +2

Query: 29  PDDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSWNSLMDFYVKSGEMVSVVRR 208
           PD FT   V +AC+ L  + +G+  H  + K  ++       +L+D Y K G+ +     
Sbjct: 302 PDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGK-IDKALE 360

Query: 209 VFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEMPCR----DTVSWTMILVGCVNAGL 376
           VF      D+ +WNS++      G   +   +F EM       + +++  +L  C + G+
Sbjct: 361 VFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGM 420

Query: 377 LSEARYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGVLADK-------VM 535
           L +AR +F+ M   +V      I  Y   GC  + LG   +++    L ++       ++
Sbjct: 421 LDQARKLFEMM--SSVYRVEPTIEHY---GCMVDLLGRMGKIEEAEELVNEIPADEASIL 475

Query: 536 LTSVLSACASLGALDQ 583
           L S+L AC   G L+Q
Sbjct: 476 LESLLGACKRFGQLEQ 491


>ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  174 bits (440), Expect = 2e-41
 Identities = 89/200 (44%), Positives = 120/200 (60%)
 Frame = +2

Query: 29  PDDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSWNSLMDFYVKSGEMVSVVRR 208
           PD +TFTF   +C    GV EG+Q H  ++K  +       N+L+  Y   G  +   R 
Sbjct: 106 PDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCG-CIEDARH 164

Query: 209 VFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEMPCRDTVSWTMILVGCVNAGLLSEA 388
           + D +   D+VSWN+LL  Y + G ++    +FDEM  R+  SW  ++ G V  GLL EA
Sbjct: 165 LLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEA 224

Query: 389 RYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGVLADKVMLTSVLSACASL 568
           R VF E P +NVVSW+AMI+GY   G + E L LF++MQ  GV  D   L SVLSACA +
Sbjct: 225 RRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHV 284

Query: 569 GALDQGCWIHSYIDKHGIEV 628
           GAL QG W+H+YIDK+GI +
Sbjct: 285 GALSQGEWVHAYIDKNGISI 304



 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 11/195 (5%)
 Frame = +2

Query: 29  PDDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSWNSLMDFYVKSGEMVSVVRR 208
           PD+ T   V +AC+ +  + +G+  HA + K  +        +L+D Y K G +   +  
Sbjct: 269 PDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKAL-E 327

Query: 209 VFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEMPCR----DTVSWTMILVGCVNAGL 376
           VF+     DI +WNS++ G    G      ++F EM       + V++  +L  C  AGL
Sbjct: 328 VFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGL 387

Query: 377 LSEARYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGVLADK-------VM 535
           L E R +F+ M   +V      I  Y   GC  + LG    ++    L  K       V+
Sbjct: 388 LDEGREMFNLMV--HVHGIQPTIEHY---GCMVDLLGRVGLLEEAEELVQKMPQKEASVV 442

Query: 536 LTSVLSACASLGALD 580
             S+L AC + G ++
Sbjct: 443 WESLLGACRNHGNVE 457


>ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297313808|gb|EFH44231.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 535

 Score =  173 bits (438), Expect = 3e-41
 Identities = 90/203 (44%), Positives = 123/203 (60%), Gaps = 1/203 (0%)
 Frame = +2

Query: 23  LYPDDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSWNSLMDFYVKSGEMVSVV 202
           ++PD ++FTFV  AC+   G  EG+Q H   +K  +       N+L++ Y +SG    + 
Sbjct: 106 VFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYF-EIA 164

Query: 203 RRVFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEMPCRDTVSWTMILVGCVNAGLLS 382
           R+V D +   D VSWNSLL  Y+  G V+E   +FDEM  R+  SW  ++ G   AGL+ 
Sbjct: 165 RKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGYAAAGLVK 224

Query: 383 EARYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEM-QVVGVLADKVMLTSVLSAC 559
           EAR VFD MP ++VVSW+AM++ Y   GC+ E L +F  M        D   L +VLSAC
Sbjct: 225 EAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSAC 284

Query: 560 ASLGALDQGCWIHSYIDKHGIEV 628
           ASLG+L QG W+H YIDKHGIE+
Sbjct: 285 ASLGSLSQGEWVHVYIDKHGIEI 307



 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 41/201 (20%)
 Frame = +2

Query: 146 SWNSLMDFYVKSGEMVSVVRRVFDGIENPDIVSWNSLLDGYVKSGRVDECTRVF-----D 310
           SWN ++  Y  +G +V   R VFD +   D+VSWN+++  Y   G  +E   VF     D
Sbjct: 209 SWNFMISGYAAAG-LVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDD 267

Query: 311 EMPCRDTVSWTMILVGCVNAGLLSEARYV------------------------------- 397
                D  +   +L  C + G LS+  +V                               
Sbjct: 268 SAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDK 327

Query: 398 ----FDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGVLADKVMLTSVLSACAS 565
               F +  +R+V +W+++I+G    G  K+AL +F EM   G   + +    VLSAC  
Sbjct: 328 ALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNH 387

Query: 566 LGALDQGCWIHSYIDK-HGIE 625
           +G LDQ   +   ++  +GIE
Sbjct: 388 VGLLDQARKLFEMMNSVYGIE 408



 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 11/196 (5%)
 Frame = +2

Query: 29  PDDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSWNSLMDFYVKSGEMVSVVRR 208
           PD FT   V +AC+ L  + +G+  H  + K  ++       +L+D Y K G+ +     
Sbjct: 272 PDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGK-IDKALE 330

Query: 209 VFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEMPCR----DTVSWTMILVGCVNAGL 376
           VF      D+ +WNS++ G    G   +   +F EM       + +++  +L  C + GL
Sbjct: 331 VFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGL 390

Query: 377 LSEARYVFDEMPERNVVSWSAMISGYVKDGCWKEAL---GLFKEMQ--VVGVLADK--VM 535
           L +AR +F+ M   +V      I  Y   GC  + L   G F+E +  V  V AD+  ++
Sbjct: 391 LDQARKLFEMM--NSVYGIEPTIEHY---GCMVDLLGRMGKFEEAEELVNEVPADEASIL 445

Query: 536 LTSVLSACASLGALDQ 583
           L S+L AC   G L+Q
Sbjct: 446 LESLLGACKRFGKLEQ 461


>ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  169 bits (428), Expect = 4e-40
 Identities = 92/201 (45%), Positives = 129/201 (64%), Gaps = 1/201 (0%)
 Frame = +2

Query: 29  PDDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSWNSLMDFYVKSGEMVSVVRR 208
           PD++TFT V  AC+ L  V EG++ H  + K   +      NSL+D Y K G    + ++
Sbjct: 125 PDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVG-CNCIAQK 183

Query: 209 VFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEMPCRDTVSWTMILVGCVNAGLLSEA 388
           +FD +   D+VSWN+L+ GY  SG VD+   VFD M  ++ VSW+ ++ G    G L EA
Sbjct: 184 LFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEA 243

Query: 389 RYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGVLA-DKVMLTSVLSACAS 565
           R +F+ MP RNVVSW+AMI+GY ++  + +A+ LF++MQ  G LA + V L SVLSACA 
Sbjct: 244 RQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAH 303

Query: 566 LGALDQGCWIHSYIDKHGIEV 628
           LGALD G WIH +I ++ IEV
Sbjct: 304 LGALDLGKWIHRFIRRNKIEV 324



 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
 Frame = +2

Query: 8   EEECVLYPDDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSWNSLMDFYVKSGE 187
           + E  L P+D T   V +AC+ L  +  GK  H  + +  ++ G    N+L D Y K G 
Sbjct: 282 QHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCG- 340

Query: 188 MVSVVRRVFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEM------PCRDTVSWTMI 349
            V   + VF  +   D++SW+ ++ G    G  +E    F EM      P  + +S+  +
Sbjct: 341 CVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEP--NDISFMGL 398

Query: 350 LVGCVNAGLLSEARYVFDEMPE 415
           L  C +AGL+ +    FD MP+
Sbjct: 399 LTACTHAGLVDKGLEYFDMMPQ 420