BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028596
         (601 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containi...   127   1e-27
ref|XP_002526491.1| pentatricopeptide repeat-containing protein,...   127   1e-27
ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containi...   115   6e-24
ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   114   2e-23
ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [...   105   5e-21

>ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  127 bits (320), Expect = 1e-27
 Identities = 71/171 (41%), Positives = 107/171 (62%), Gaps = 5/171 (2%)
 Frame = -1

Query: 544 LTQFSPFQNPT-----VNSYERRLILVNLSKLIKQGQTSFLNSLSSHFCPYTLSKLILKH 380
           L QFSPF + +     +N  ERR I+V LSK+IKQ Q   L   + +FCP  L K++   
Sbjct: 62  LDQFSPFPSSSSSKFSINPNERRKIVVRLSKMIKQSQGYVLRGFAQNFCPCFLVKIM--K 119

Query: 379 FGPNRKLSFAFFKFSFQENXXXXXXXXXXXLIHILASHDLRFLSQDVLTHVVHNVGPARS 200
              +R+++FAFFKF+FQ++             H+LA+ +LR ++QDV+  V+  +G  RS
Sbjct: 120 LLESREIAFAFFKFAFQDDSESTIRSCCVAA-HLLAAEELRHVAQDVIWWVIARIGVLRS 178

Query: 199 QEIIDLMWSDHLDYETGFSVLDSLMRAFLKVDMIKQVLLVVGKMREEGLKP 47
            ++++ MW  H  YE+ FSVLDSLMRAF+  +M  Q L ++G+MRE G++P
Sbjct: 179 GDLVEFMWRGHHVYESDFSVLDSLMRAFVNAEMGFQALEILGRMREVGVRP 229


>ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534166|gb|EEF35882.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 884

 Score =  127 bits (319), Expect = 1e-27
 Identities = 68/176 (38%), Positives = 109/176 (61%), Gaps = 6/176 (3%)
 Frame = -1

Query: 556 TYSILTQFSPFQNP------TVNSYERRLILVNLSKLIKQGQTSFLNSLSSHFCPYTLSK 395
           ++    QFSPF +       ++NS ERR+++V LSKLIKQG+   L S S  FCP+ L K
Sbjct: 69  SFDYFYQFSPFCHSNSNYLSSLNSNERRILVVELSKLIKQGKGYILKSFSQKFCPFFLVK 128

Query: 394 LILKHFGPNRKLSFAFFKFSFQENXXXXXXXXXXXLIHILASHDLRFLSQDVLTHVVHNV 215
           ++      +R+ +FAFFK +FQ N             HILA+  L+ L+QDV++ V+  +
Sbjct: 129 IM--KLLESRQSAFAFFKLAFQ-NDSDATVHSCCIAAHILAAESLQLLAQDVISWVIRRI 185

Query: 214 GPARSQEIIDLMWSDHLDYETGFSVLDSLMRAFLKVDMIKQVLLVVGKMREEGLKP 47
           G +RS  +++ MW++H  YE+ FS+L++LMR F+  +M  + L ++ +MRE G++P
Sbjct: 186 GASRSAHLVEFMWANHHKYESDFSILNTLMRGFMNSEMAYESLEILSRMREVGVRP 241


>ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 917

 Score =  115 bits (288), Expect = 6e-24
 Identities = 69/178 (38%), Positives = 104/178 (58%), Gaps = 8/178 (4%)
 Frame = -1

Query: 556 TYSILTQFSPFQNPT--------VNSYERRLILVNLSKLIKQGQTSFLNSLSSHFCPYTL 401
           ++  + QF P  + T        V + +RR + V LSK IK  Q   L  LS +FCP+ L
Sbjct: 77  SFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVTVGLSKAIKLYQGYVLKGLSRNFCPFLL 136

Query: 400 SKLILKHFGPNRKLSFAFFKFSFQENXXXXXXXXXXXLIHILASHDLRFLSQDVLTHVVH 221
            K I+K F   R+ ++AFFK +F+++             H+LA+  LRFL+QD+++ VV 
Sbjct: 137 VK-IMKLF-ECRETAYAFFKLAFKDDSEETVRSCCVLA-HLLAAEQLRFLAQDIVSWVVA 193

Query: 220 NVGPARSQEIIDLMWSDHLDYETGFSVLDSLMRAFLKVDMIKQVLLVVGKMREEGLKP 47
            +GP RS+ +   MW  H  YE+ +SVLD+LMRAF+K +M  + L ++ KMRE G+ P
Sbjct: 194 RIGPGRSKNLAAFMWEGHRVYESDYSVLDTLMRAFVKSEMHFEALEILSKMREVGVTP 251


>ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g19290-like [Cucumis
           sativus]
          Length = 885

 Score =  114 bits (284), Expect = 2e-23
 Identities = 68/178 (38%), Positives = 104/178 (58%), Gaps = 8/178 (4%)
 Frame = -1

Query: 556 TYSILTQFSPFQNPT--------VNSYERRLILVNLSKLIKQGQTSFLNSLSSHFCPYTL 401
           ++  + QF P  + T        V + +RR + V LSK IK  Q   L  +S +FCP+ L
Sbjct: 46  SFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVTVGLSKAIKLYQGYVLKDVSRNFCPFLL 105

Query: 400 SKLILKHFGPNRKLSFAFFKFSFQENXXXXXXXXXXXLIHILASHDLRFLSQDVLTHVVH 221
            K I+K F   R+ ++AFFK +F+++             H+LA+  LRFL+QD+++ VV 
Sbjct: 106 VK-IMKLF-ECRETAYAFFKLAFKDDSEETVRSCCVLA-HLLAAEQLRFLAQDIVSWVVA 162

Query: 220 NVGPARSQEIIDLMWSDHLDYETGFSVLDSLMRAFLKVDMIKQVLLVVGKMREEGLKP 47
            +GP RS+ +   MW  H  YE+ FSVLD+LM+AF+K +M  + L ++ KMRE G+ P
Sbjct: 163 RIGPGRSKNLAAFMWEGHRVYESDFSVLDTLMQAFVKSEMHFEALEILSKMREVGVTP 220


>ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  105 bits (263), Expect = 5e-21
 Identities = 65/174 (37%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
 Frame = -1

Query: 556 TYSILTQFSPFQNPTVNSY---ERRLILVNLSKLIKQGQTSFLNSLSSHFCPYTLSKLIL 386
           T   L+QF P  +   N     ERR+++V LS ++K  Q   L + S  FCP+ L K I+
Sbjct: 39  TSHYLSQFLPLSHSNFNPLTPRERRIVVVGLSTILKTDQGFPLKAFSLRFCPFFLVK-IM 97

Query: 385 KHFGPNRKLSFAFFKFSFQE-NXXXXXXXXXXXLIHILASHDLRFLSQDVLTHVVHNVGP 209
           K F   R  +FAFFK +F + +             H+LA+  L+ L+QDV++ ++  VG 
Sbjct: 98  KLF-KTRDAAFAFFKLAFGDCSDSEEILRLSCVAAHVLAAQKLQLLAQDVVSWLIARVGT 156

Query: 208 ARSQEIIDLMWSDHLDYETGFSVLDSLMRAFLKVDMIKQVLLVVGKMREEGLKP 47
            R+ +I+D MW +H  YE+ FSVL++L+R FL V M  + L V+  MR  G++P
Sbjct: 157 GRTNKIVDFMWRNHAMYESDFSVLNTLLRGFLNVGMGFEALEVLRMMRGVGVRP 210