BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028581
         (387 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]              97   1e-18
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                 97   2e-18
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...    91   7e-17
gb|ADB85436.1| putative retrotransposon protein [Phyllostachys e...    91   1e-16
gb|ADB85317.1| putative retrotransposon protein [Phyllostachys e...    90   2e-16

>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 47/104 (45%), Positives = 67/104 (64%)
 Frame = -1

Query: 384  ILATELNLIEEKREIARIQLEEYHRKLQRQYDKRVKPQTFRVGDLVLRRVTLATKKENDG 205
            +L   L+ I E+R+ A I+++ Y +   R Y+ +VK + F VGD VLRRV    K+E  G
Sbjct: 999  MLNDSLDTINERRDQALIRIQNYQQAAARYYNSKVKSRPFFVGDYVLRRVFDNKKEEGAG 1058

Query: 204  KLGPNWEGPYVVTEKGTSGTYRLKTSAGEMIEKPWNIRMLKKFH 73
            KLG NWEGPY++TE   +G YRLK      +++PWN+  LKKF+
Sbjct: 1059 KLGINWEGPYIITEVVRNGVYRLKDLEDNPVKRPWNVINLKKFY 1102


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 44/104 (42%), Positives = 66/104 (63%)
 Frame = -1

Query: 384  ILATELNLIEEKREIARIQLEEYHRKLQRQYDKRVKPQTFRVGDLVLRRVTLATKKENDG 205
            +L   LN IEE+RE+A +++  Y +KL++ YDK VK +    GDLVLR+V    +    G
Sbjct: 1002 MLHDSLNTIEERREVASVKMGSYQQKLKQAYDKGVKSRPLVPGDLVLRKVVGTARNPAWG 1061

Query: 204  KLGPNWEGPYVVTEKGTSGTYRLKTSAGEMIEKPWNIRMLKKFH 73
            KLG NWEGPY +T     G YRL+   G ++ +PWN+  L++++
Sbjct: 1062 KLGTNWEGPYRITSVAGIGAYRLEDLDGRVVHRPWNVNNLRRYY 1105


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 44/97 (45%), Positives = 61/97 (62%)
 Frame = -1

Query: 384  ILATELNLIEEKREIARIQLEEYHRKLQRQYDKRVKPQTFRVGDLVLRRVTLATKKENDG 205
            +L   L+ I E+R+ A IQ++ Y     R Y+ +VK + F VGD VL+RV    K+E  G
Sbjct: 1182 MLDDSLDTINERRDQALIQIQNYQHAAARYYNSKVKSRPFFVGDYVLKRVFDNKKEEGAG 1241

Query: 204  KLGPNWEGPYVVTEKGTSGTYRLKTSAGEMIEKPWNI 94
            KLG NWEGPY+VTE   +G YRLK      +++PWN+
Sbjct: 1242 KLGINWEGPYIVTEVVRNGVYRLKDLEDRPVQRPWNV 1278


>gb|ADB85436.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 490

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 45/102 (44%), Positives = 63/102 (61%)
 Frame = -1

Query: 378 ATELNLIEEKREIARIQLEEYHRKLQRQYDKRVKPQTFRVGDLVLRRVTLATKKENDGKL 199
           A ++NL+EE+R  A I+   Y + L+R YD++V+P++  VGDLVLR   L   K N  KL
Sbjct: 391 ADDINLLEERRNQALIRSAVYQQALRRYYDRKVQPRSLAVGDLVLR---LCQSKSNRNKL 447

Query: 198 GPNWEGPYVVTEKGTSGTYRLKTSAGEMIEKPWNIRMLKKFH 73
            P WEGPY V E    G+ RL    G+++   WNI  L+KF+
Sbjct: 448 SPKWEGPYTVVEVTRPGSVRLAMEDGQVLLNSWNIDQLRKFY 489


>gb|ADB85317.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 422

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 45/102 (44%), Positives = 62/102 (60%)
 Frame = -1

Query: 378 ATELNLIEEKREIARIQLEEYHRKLQRQYDKRVKPQTFRVGDLVLRRVTLATKKENDGKL 199
           A ++NL+EE+R  A I+   Y + L+R YD+ V+P++  VGDLVLR   L   K N  KL
Sbjct: 323 ADDINLLEERRNQALIRSAIYQQALRRYYDRMVQPRSLAVGDLVLR---LCQSKSNRNKL 379

Query: 198 GPNWEGPYVVTEKGTSGTYRLKTSAGEMIEKPWNIRMLKKFH 73
            P WEGPY V E    G+ RL    G+++   WNI  L+KF+
Sbjct: 380 SPKWEGPYTVVEVTRPGSVRLAMEDGQVLSNSWNIDQLRKFY 421