BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028571
         (348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...   108   6e-22
ref|XP_003567522.1| PREDICTED: pentatricopeptide repeat-containi...   101   6e-20
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...   100   2e-19
gb|EAY77393.1| hypothetical protein OsI_05381 [Oryza sativa Indi...    99   5e-19
ref|NP_001045530.1| Os01g0970900 [Oryza sativa Japonica Group] g...    99   5e-19

>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  108 bits (269), Expect = 6e-22
 Identities = 56/113 (49%), Positives = 71/113 (62%)
 Frame = -2

Query: 347 HCLAGEIDQALNVFTQMLEKNFDADSGLLEVLVNGLCGKQRVDDAYTLVIEMVEKVKMKP 168
           HC A E+D+AL  F +M+EKN DAD+ LLEVL+NG   ++R+D AY L++EMV    + P
Sbjct: 452 HCAAKEVDKALICFAKMMEKNCDADADLLEVLINGFLSQKRIDGAYKLLVEMVNTAHLVP 511

Query: 167 LLDTYKNLIQKLLGXXXXXXXXXXXXXXXKQNCPSLEEPFNDYISKFGTVDDA 9
              TYK +I KLLG               KQN P   EPF +YISKFGTV+DA
Sbjct: 512 WQATYKLMINKLLGVRKLEEAINLLHLMKKQNYPPFPEPFIEYISKFGTVEDA 564


>ref|XP_003567522.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Brachypodium distachyon]
          Length = 585

 Score =  101 bits (252), Expect = 6e-20
 Identities = 48/115 (41%), Positives = 71/115 (61%)
 Frame = -2

Query: 347 HCLAGEIDQALNVFTQMLEKNFDADSGLLEVLVNGLCGKQRVDDAYTLVIEMVEKVKMKP 168
           HC AGE+D+AL   T+M+E N DAD+ LL+V+V GLC + +VD AYTL +EMV+K ++ P
Sbjct: 407 HCTAGEVDKALQYLTEMIENNLDADADLLDVMVRGLCNQDKVDAAYTLFVEMVDKAQLNP 466

Query: 167 LLDTYKNLIQKLLGXXXXXXXXXXXXXXXKQNCPSLEEPFNDYISKFGTVDDAID 3
              TYK++I +LL                 +  P   +PF   I+++GT++DA D
Sbjct: 467 WQGTYKHIISELLRVKKLEEALGLLKSMKARKFPPFADPFPPNIAEYGTLEDAKD 521


>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 50/115 (43%), Positives = 70/115 (60%)
 Frame = -2

Query: 347 HCLAGEIDQALNVFTQMLEKNFDADSGLLEVLVNGLCGKQRVDDAYTLVIEMVEKVKMKP 168
           HC+A E+ +AL    +M+EK+ D D+ LL VL+N    ++R+D AYTL ++MV+K +++P
Sbjct: 450 HCVANEVGKALMCLAKMMEKHCDPDADLLAVLINAFLSQKRIDGAYTLFMDMVDKARLRP 509

Query: 167 LLDTYKNLIQKLLGXXXXXXXXXXXXXXXKQNCPSLEEPFNDYISKFGTVDDAID 3
              TYK LI+KLL                + N P   EPF  YIS+FGTVDDA D
Sbjct: 510 WQATYKLLIEKLLEVRKLEEALNLLRLMKQHNHPPFPEPFVQYISRFGTVDDAAD 564


>gb|EAY77393.1| hypothetical protein OsI_05381 [Oryza sativa Indica Group]
          Length = 573

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 45/113 (39%), Positives = 68/113 (60%)
 Frame = -2

Query: 347 HCLAGEIDQALNVFTQMLEKNFDADSGLLEVLVNGLCGKQRVDDAYTLVIEMVEKVKMKP 168
           HC AGE+++AL  FT+M+EKN +AD+ LL+V+V GLC   ++D +Y   +EMV+K  + P
Sbjct: 394 HCAAGEVEKALQYFTEMVEKNLEADAALLDVMVKGLCSDDKIDASYAFFVEMVDKANLSP 453

Query: 167 LLDTYKNLIQKLLGXXXXXXXXXXXXXXXKQNCPSLEEPFNDYISKFGTVDDA 9
              TYK++I +LL                 +  P   +PF  +I+K+GT DDA
Sbjct: 454 WQGTYKHIIGELLRVKKLEEALGLLRSMKARKFPPFADPFPTHIAKYGTFDDA 506


>ref|NP_001045530.1| Os01g0970900 [Oryza sativa Japonica Group]
           gi|15289974|dbj|BAB63669.1| pentatricopeptide (PPR)
           repeat-containing protein -like [Oryza sativa Japonica
           Group] gi|113535061|dbj|BAF07444.1| Os01g0970900 [Oryza
           sativa Japonica Group] gi|125573469|gb|EAZ14984.1|
           hypothetical protein OsJ_04919 [Oryza sativa Japonica
           Group] gi|215678751|dbj|BAG95188.1| unnamed protein
           product [Oryza sativa Japonica Group]
           gi|215693250|dbj|BAG88632.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 573

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 45/113 (39%), Positives = 68/113 (60%)
 Frame = -2

Query: 347 HCLAGEIDQALNVFTQMLEKNFDADSGLLEVLVNGLCGKQRVDDAYTLVIEMVEKVKMKP 168
           HC AGE+++AL  FT+M+EKN +AD+ LL+V+V GLC   ++D +Y   +EMV+K  + P
Sbjct: 394 HCAAGEVEKALQYFTEMVEKNLEADAALLDVMVKGLCSDDKIDASYAFFVEMVDKANLSP 453

Query: 167 LLDTYKNLIQKLLGXXXXXXXXXXXXXXXKQNCPSLEEPFNDYISKFGTVDDA 9
              TYK++I +LL                 +  P   +PF  +I+K+GT DDA
Sbjct: 454 WQGTYKHIIGELLRVKKLEEALGLLRSMKARKFPPFADPFPTHIAKYGTFDDA 506