BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028570
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...   127   1e-27
ref|XP_002459173.1| hypothetical protein SORBIDRAFT_03g047260 [S...   126   2e-27
ref|XP_003567522.1| PREDICTED: pentatricopeptide repeat-containi...   124   1e-26
dbj|BAJ98559.1| predicted protein [Hordeum vulgare subsp. vulgare]    122   4e-26
gb|EAY77393.1| hypothetical protein OsI_05381 [Oryza sativa Indi...   121   5e-26

>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  127 bits (318), Expect = 1e-27
 Identities = 63/118 (53%), Positives = 86/118 (72%), Gaps = 8/118 (6%)
 Frame = +3

Query: 3   GRFDEAGKVLDTMRNAGYEPDS-TLTATVFGFCKAGRKEER-------EAQGYILDFRTW 158
           GRFDEAGK++++MR+AG EPD+ T +  V+G CKA + EE        EA G + D +TW
Sbjct: 386 GRFDEAGKIMESMRSAGCEPDNITYSQLVYGLCKARKLEEACKLLDEMEACGCVPDIKTW 445

Query: 159 TLLIQRHCLAGEIDQALNFFTEMLEKNFDADPNLLEALVNGLCSKERVDGAYSLVIEM 332
           T+LIQ HC A E+D+AL  F +M+EKN DAD +LLE L+NG  S++R+DGAY L++EM
Sbjct: 446 TILIQGHCAAKEVDKALICFAKMMEKNCDADADLLEVLINGFLSQKRIDGAYKLLVEM 503


>ref|XP_002459173.1| hypothetical protein SORBIDRAFT_03g047260 [Sorghum bicolor]
           gi|241931148|gb|EES04293.1| hypothetical protein
           SORBIDRAFT_03g047260 [Sorghum bicolor]
          Length = 574

 Score =  126 bits (316), Expect = 2e-27
 Identities = 59/118 (50%), Positives = 87/118 (73%), Gaps = 8/118 (6%)
 Frame = +3

Query: 3   GRFDEAGKVLDTMRNAGYEPDS-TLTATVFGFCKAGRKE-------EREAQGYILDFRTW 158
           G+FDEA +++ TMR+ G++PD+ T +  V+G CKAG+ E       E EA+G + D +TW
Sbjct: 330 GKFDEAAEIVQTMRDQGHQPDNVTYSQLVYGLCKAGKLEDARKVLDEMEAEGCVPDLKTW 389

Query: 159 TLLIQRHCLAGEIDQALNFFTEMLEKNFDADPNLLEALVNGLCSKERVDGAYSLVIEM 332
           TLLIQ +C AG++D+A+ +FTEM+EK  DAD +LL+ ++ GLCS E+V+ AYSL +EM
Sbjct: 390 TLLIQGYCSAGDVDRAVQYFTEMIEKGLDADADLLDVILKGLCSHEKVEEAYSLFVEM 447


>ref|XP_003567522.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Brachypodium distachyon]
          Length = 585

 Score =  124 bits (310), Expect = 1e-26
 Identities = 58/118 (49%), Positives = 85/118 (72%), Gaps = 8/118 (6%)
 Frame = +3

Query: 3   GRFDEAGKVLDTMRNAGYEPDS-TLTATVFGFCKAGRKEER-------EAQGYILDFRTW 158
           GRFDEA +V+++MR+ G++PD+ T +  VFG CKA + +E        E +G   D +TW
Sbjct: 341 GRFDEAAEVMESMRSEGHQPDNITYSQLVFGLCKANKCDEARKVLVEMENEGCAPDLKTW 400

Query: 159 TLLIQRHCLAGEIDQALNFFTEMLEKNFDADPNLLEALVNGLCSKERVDGAYSLVIEM 332
           T+LIQ HC AGE+D+AL + TEM+E N DAD +LL+ +V GLC++++VD AY+L +EM
Sbjct: 401 TMLIQGHCTAGEVDKALQYLTEMIENNLDADADLLDVMVRGLCNQDKVDAAYTLFVEM 458


>dbj|BAJ98559.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 592

 Score =  122 bits (305), Expect = 4e-26
 Identities = 56/118 (47%), Positives = 84/118 (71%), Gaps = 8/118 (6%)
 Frame = +3

Query: 3   GRFDEAGKVLDTMRNAGYEPDS-TLTATVFGFCKAGR-------KEEREAQGYILDFRTW 158
           GRFDEA ++++ MR AG++PD+ T +  +FG CKA +        +E EA+G   D +TW
Sbjct: 348 GRFDEAAEIVERMRTAGHQPDNITYSQLIFGLCKAAKCDEARQVLDEMEAEGCTPDLKTW 407

Query: 159 TLLIQRHCLAGEIDQALNFFTEMLEKNFDADPNLLEALVNGLCSKERVDGAYSLVIEM 332
           T+LIQ HC AGE+D+AL + TEM+EK+ +AD +LL+ +V GLC +++ D AY+L +EM
Sbjct: 408 TMLIQGHCAAGEVDKALQYLTEMIEKDLEADADLLDVMVKGLCRQDKFDAAYTLFVEM 465


>gb|EAY77393.1| hypothetical protein OsI_05381 [Oryza sativa Indica Group]
          Length = 573

 Score =  121 bits (304), Expect = 5e-26
 Identities = 55/118 (46%), Positives = 83/118 (70%), Gaps = 8/118 (6%)
 Frame = +3

Query: 3   GRFDEAGKVLDTMRNAGYEPDS-TLTATVFGFCKAGR-------KEEREAQGYILDFRTW 158
           GRFDEA +++  M+  G++PD+ T +  +FG CKA R        +E EA+G + D +TW
Sbjct: 328 GRFDEAAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTW 387

Query: 159 TLLIQRHCLAGEIDQALNFFTEMLEKNFDADPNLLEALVNGLCSKERVDGAYSLVIEM 332
           T+LIQ HC AGE+++AL +FTEM+EKN +AD  LL+ +V GLCS +++D +Y+  +EM
Sbjct: 388 TMLIQGHCAAGEVEKALQYFTEMVEKNLEADAALLDVMVKGLCSDDKIDASYAFFVEM 445