BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028562
         (278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]              59   1e-12
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]              55   7e-11
gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsi...    58   3e-10
emb|CAN83961.1| hypothetical protein VITISV_011587 [Vitis vinifera]    48   5e-09
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...    54   1e-08

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score = 59.3 bits (142), Expect(2) = 1e-12
 Identities = 26/53 (49%), Positives = 36/53 (67%)
 Frame = -3

Query: 159  FLQILKKGEQFSWNEQCHQAFSTLKDYLTTLPVLAKPIDGETLGIYLVISDFA 1
            F  +LK+  QF W++   +AF  LKDYL+T P+L KP  GETL +Y+ +SD A
Sbjct: 1079 FYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHA 1131



 Score = 38.5 bits (88), Expect(2) = 1e-12
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = -1

Query: 269  SVLEHAQPKN-REANT*TVRNGAALNRFISRASDKCRPSYRFSRR 138
            ++LE   P+N RE    T R  AALNRFISR++DKC P Y   +R
Sbjct: 1042 AILELPSPRNAREVQRLTGRI-AALNRFISRSTDKCLPFYNLLKR 1085


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score = 55.1 bits (131), Expect(3) = 7e-11
 Identities = 26/53 (49%), Positives = 36/53 (67%)
 Frame = -3

Query: 159 FLQILKKGEQFSWNEQCHQAFSTLKDYLTTLPVLAKPIDGETLGIYLVISDFA 1
           F QILK  + F W+E+C +AF  LK YLTT P+L+KP   E L +Y+ +S+ A
Sbjct: 276 FYQILKGNKGFLWDEKCEEAFGQLKAYLTTPPILSKPEVDEKLYLYVSVSNHA 328



 Score = 29.6 bits (65), Expect(3) = 7e-11
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = -1

Query: 206 AALNRFISRASDKCRPSYR 150
           AALNRFISR++DK  P Y+
Sbjct: 260 AALNRFISRSTDKSLPFYQ 278



 Score = 26.2 bits (56), Expect(3) = 7e-11
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 265 FLNMPNPKTEKQIHKLLG 212
           FLNMP+P+  K++ +L G
Sbjct: 240 FLNMPSPRNFKEVQRLTG 257


>gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 889

 Score = 58.2 bits (139), Expect(3) = 3e-10
 Identities = 26/46 (56%), Positives = 32/46 (69%)
 Frame = -3

Query: 159 FLQILKKGEQFSWNEQCHQAFSTLKDYLTTLPVLAKPIDGETLGIY 22
           F Q L+KG++F WN+ C QAF  LK YLT  P+LAKP  GE L +Y
Sbjct: 498 FYQPLRKGKEFDWNKDCEQAFKQLKAYLTEPPILAKPEKGEPLYLY 543



 Score = 27.3 bits (59), Expect(3) = 3e-10
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -1

Query: 203 ALNRFISRASDKCRPSYRFSRR 138
           ALN FISR+++KC P Y+  R+
Sbjct: 483 ALNGFISRSANKCVPFYQPLRK 504



 Score = 23.5 bits (49), Expect(3) = 3e-10
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 265 FLNMPNPKTEKQIHKLLG 212
           F+ MP+PK  +++ +L G
Sbjct: 462 FIEMPSPKMAREVQRLTG 479


>emb|CAN83961.1| hypothetical protein VITISV_011587 [Vitis vinifera]
          Length = 2267

 Score = 47.8 bits (112), Expect(3) = 5e-09
 Identities = 21/51 (41%), Positives = 30/51 (58%)
 Frame = -3

Query: 153  QILKKGEQFSWNEQCHQAFSTLKDYLTTLPVLAKPIDGETLGIYLVISDFA 1
            + L+K +   WN+ C  AF  +K+YL + PVL  P  G  L +YL +SD A
Sbjct: 1551 RFLRKNQPTVWNDDCQFAFEKIKEYLLSPPVLVPPTPGRPLLLYLSVSDMA 1601



 Score = 29.6 bits (65), Expect(3) = 5e-09
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 200  LNRFISRASDKCRPSYRFSRR 138
            +NRFI+R +D C P +RF R+
Sbjct: 1535 INRFIARLTDICEPIFRFLRK 1555



 Score = 26.9 bits (58), Expect(3) = 5e-09
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 262  LNMPNPKTEKQIHKLLG 212
            L+MP PKTEK+I   LG
Sbjct: 1514 LDMPAPKTEKEIRSFLG 1530


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 53.9 bits (128), Expect(2) = 1e-08
 Identities = 26/53 (49%), Positives = 36/53 (67%)
 Frame = -3

Query: 159 FLQILKKGEQFSWNEQCHQAFSTLKDYLTTLPVLAKPIDGETLGIYLVISDFA 1
           F QILK  ++F W+E+C +AF  LK YLT+ PVL KP   E L +Y+ +S+ A
Sbjct: 719 FYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSNHA 771



 Score = 30.0 bits (66), Expect(2) = 1e-08
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 263 LEHAQPKNREANT*TVRNGAALNRFISRASDKCRPSYR 150
           L    PKN +         AALNRFISR++DK  P Y+
Sbjct: 684 LNMPSPKNFKEVQRLTGRIAALNRFISRSTDKSLPFYQ 721