BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028520
         (319 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77449.1| hypothetical protein VITISV_016970 [Vitis vinifera]   108   4e-22
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...   108   4e-22
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...   105   5e-21
gb|ABN07997.1| contains similarity to reverse trancriptase , rel...   104   7e-21
dbj|BAB01814.1| unnamed protein product [Arabidopsis thaliana]        103   1e-20

>emb|CAN77449.1| hypothetical protein VITISV_016970 [Vitis vinifera]
          Length = 517

 Score =  108 bits (271), Expect = 4e-22
 Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
 Frame = +3

Query: 12  FEYLVEKVHRKISGWKSKILSASGRTTLIKTVAQAVPIYAMSTYILPVKITNKLDKLSRD 191
           F +L +++ R++ GW+SK+LS +G+  LIK V QA+P Y MST++LP+ ++ +L K+   
Sbjct: 166 FGFLRDRLWRRLQGWQSKLLSQAGKKILIKVVGQAIPSYCMSTFLLPISLSEELQKMMNS 225

Query: 192 FWWN-GTDKSRSYHTLSWDKLCRSKGEGGLGFRKTREMNQALI 317
           FWW   +D  R  + LSWDKLC  K EGGLGFR  R+ N A++
Sbjct: 226 FWWGPKSDGGRRINWLSWDKLCLRKEEGGLGFRNLRDFNLAML 268


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score =  108 bits (271), Expect = 4e-22
 Identities = 48/102 (47%), Positives = 71/102 (69%)
 Frame = +3

Query: 12  FEYLVEKVHRKISGWKSKILSASGRTTLIKTVAQAVPIYAMSTYILPVKITNKLDKLSRD 191
           F  ++E+V  ++SGWKS+ LS +GR TL K V  ++PI+ MS+ +LP  +  +LDK+SR+
Sbjct: 563 FGEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRN 622

Query: 192 FWWNGTDKSRSYHTLSWDKLCRSKGEGGLGFRKTREMNQALI 317
           F W  T + R  H LSW K+CR K  GGLG R +++MN+AL+
Sbjct: 623 FLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALL 664


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score =  105 bits (261), Expect = 5e-21
 Identities = 47/102 (46%), Positives = 68/102 (66%)
 Frame = +3

Query: 12  FEYLVEKVHRKISGWKSKILSASGRTTLIKTVAQAVPIYAMSTYILPVKITNKLDKLSRD 191
           F  ++E+V  ++SGW+ K LS +GR TL K V  ++P+++MST +LP  I N+LD+LSR 
Sbjct: 13  FGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRT 72

Query: 192 FWWNGTDKSRSYHTLSWDKLCRSKGEGGLGFRKTREMNQALI 317
           F W  T + +  H + W K+C  K EGGLG R  + MN+ALI
Sbjct: 73  FLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALI 114


>gb|ABN07997.1| contains similarity to reverse trancriptase , related [Medicago
           truncatula]
          Length = 407

 Score =  104 bits (260), Expect = 7e-21
 Identities = 48/103 (46%), Positives = 67/103 (65%)
 Frame = +3

Query: 9   DFEYLVEKVHRKISGWKSKILSASGRTTLIKTVAQAVPIYAMSTYILPVKITNKLDKLSR 188
           DF +++E++ +K  GWK K LS  GR  LIK VAQA+P Y MS ++LP  +  K++K   
Sbjct: 44  DFHFIMERIWKKHKGWKKKCLSFEGRGVLIKAVAQAIPTYYMSCFMLPKGLCTKIEKAIC 103

Query: 189 DFWWNGTDKSRSYHTLSWDKLCRSKGEGGLGFRKTREMNQALI 317
            FWW  TDK++  H +S  KL RSK  GGLGF+  R+ N A++
Sbjct: 104 SFWWGTTDKNKKMHWVSKKKLFRSKHSGGLGFKTLRDFNLAML 146


>dbj|BAB01814.1| unnamed protein product [Arabidopsis thaliana]
          Length = 170

 Score =  103 bits (258), Expect = 1e-20
 Identities = 45/102 (44%), Positives = 64/102 (62%)
 Frame = +3

Query: 12  FEYLVEKVHRKISGWKSKILSASGRTTLIKTVAQAVPIYAMSTYILPVKITNKLDKLSRD 191
           F ++ +++  +I+GW +K LS  G+  +IK VA A+P Y MS + LP  IT+KL      
Sbjct: 19  FSFVRDRLQNRINGWSAKFLSKGGKEVMIKLVATALPTYVMSCFTLPKTITSKLTSAIPK 78

Query: 192 FWWNGTDKSRSYHTLSWDKLCRSKGEGGLGFRKTREMNQALI 317
           FWW+   +SR  H ++WDK+C SK EGGLGFR     N AL+
Sbjct: 79  FWWSSNGESRGMHWMAWDKVCYSKSEGGLGFRSVDNFNSALL 120