BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028506
         (626 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268821.1| PREDICTED: pentatricopeptide repeat-containi...   348   3e-94
ref|XP_002324000.1| predicted protein [Populus trichocarpa] gi|2...   336   2e-90
ref|XP_002526948.1| pentatricopeptide repeat-containing protein,...   330   2e-88
ref|XP_002873660.1| pentatricopeptide repeat-containing protein ...   319   2e-85
ref|NP_190245.1| pentatricopeptide repeat-containing protein [Ar...   318   4e-85

>ref|XP_002268821.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46610
           [Vitis vinifera]
          Length = 763

 Score =  348 bits (894), Expect = 3e-94
 Identities = 165/208 (79%), Positives = 183/208 (87%)
 Frame = +2

Query: 2   EEIERKGMSPSPVSYSTALAAYRRMEDGNGGLKFFTELRDRYKKGEIGKYDDEDWENEFV 181
           EEI++ G+ PSPVSYSTAL  YRRMEDG+G LKFF ELR+ Y KGEIGK  DEDWENEFV
Sbjct: 304 EEIQKNGLCPSPVSYSTALLVYRRMEDGHGALKFFIELRENYLKGEIGKDADEDWENEFV 363

Query: 182 KLEKFTIRICYQVMRRWLVKGDHSSTKVLQLLSEMDKAGLNPGRAEYERLVWACTLEGHH 361
           KL+ FTIRICYQVMRRWLVK  + S  +L+LL++MD AGL PGRAEYERLVWACT E H+
Sbjct: 364 KLKNFTIRICYQVMRRWLVKEGNQSPILLKLLADMDNAGLQPGRAEYERLVWACTREEHY 423

Query: 362 IVAKDLYKRIRERESEISLSVCNHAIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELV 541
           +VAK+LY RIRER +EISLSVCNH IWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELV
Sbjct: 424 VVAKELYTRIRERHTEISLSVCNHIIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELV 483

Query: 542 VSHFNVLLTAASRRGIWRWGVGLLNKME 625
           VSHFN+LLTAA ++GIWRWGV LLNKME
Sbjct: 484 VSHFNILLTAARKKGIWRWGVRLLNKME 511


>ref|XP_002324000.1| predicted protein [Populus trichocarpa] gi|222867002|gb|EEF04133.1|
           predicted protein [Populus trichocarpa]
          Length = 709

 Score =  336 bits (862), Expect = 2e-90
 Identities = 156/208 (75%), Positives = 183/208 (87%)
 Frame = +2

Query: 2   EEIERKGMSPSPVSYSTALAAYRRMEDGNGGLKFFTELRDRYKKGEIGKYDDEDWENEFV 181
           EE+ R G +PS  SYS+AL AYR+MEDG+G LKFF E++D+Y KGEIGK  DEDWE E+V
Sbjct: 252 EEMRRNGFTPSAASYSSALLAYRKMEDGDGALKFFVEIKDKYMKGEIGKDADEDWEREYV 311

Query: 182 KLEKFTIRICYQVMRRWLVKGDHSSTKVLQLLSEMDKAGLNPGRAEYERLVWACTLEGHH 361
           KLE FTIR+CYQVMRRWLV+ ++ +T VL+LL++MDKA L PGR++YERLVWACT E H+
Sbjct: 312 KLENFTIRVCYQVMRRWLVRLENLNTNVLKLLTDMDKAELQPGRSDYERLVWACTREEHY 371

Query: 362 IVAKDLYKRIRERESEISLSVCNHAIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELV 541
           +VAK+LY RIRER S+ISLSVCNH IWLMGKAKKWWAALE+YEDLLDKGPKPNNLSYEL+
Sbjct: 372 VVAKELYIRIRERCSDISLSVCNHVIWLMGKAKKWWAALEVYEDLLDKGPKPNNLSYELI 431

Query: 542 VSHFNVLLTAASRRGIWRWGVGLLNKME 625
           VS+FNVLLTAA +RGIWRWGV LLNKME
Sbjct: 432 VSYFNVLLTAAKKRGIWRWGVRLLNKME 459


>ref|XP_002526948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533700|gb|EEF35435.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 671

 Score =  330 bits (845), Expect = 2e-88
 Identities = 154/208 (74%), Positives = 177/208 (85%)
 Frame = +2

Query: 2   EEIERKGMSPSPVSYSTALAAYRRMEDGNGGLKFFTELRDRYKKGEIGKYDDEDWENEFV 181
           E++  KG  P+  SYSTAL AYR MEDG+G L FF +++D+Y KG+IGK  DE+WENEFV
Sbjct: 212 EQMHEKGFIPTAASYSTALLAYRGMEDGHGALAFFVDIKDKYLKGKIGKNSDENWENEFV 271

Query: 182 KLEKFTIRICYQVMRRWLVKGDHSSTKVLQLLSEMDKAGLNPGRAEYERLVWACTLEGHH 361
           KLE F IRICYQVMRRWLV+ D+ ST VL+LL++MDKAGL P +AEYERLVWACT E H+
Sbjct: 272 KLETFIIRICYQVMRRWLVRHDNFSTDVLKLLTDMDKAGLQPSQAEYERLVWACTREDHY 331

Query: 362 IVAKDLYKRIRERESEISLSVCNHAIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELV 541
            V K+LY RIRER S+ISLSVCNH IWLMGKAKKWWAALEIYEDLLDKGP PNN+SYEL+
Sbjct: 332 AVGKELYIRIRERHSKISLSVCNHLIWLMGKAKKWWAALEIYEDLLDKGPNPNNMSYELI 391

Query: 542 VSHFNVLLTAASRRGIWRWGVGLLNKME 625
           VSHFN+LLTAA +RGIWRWGV LLNKME
Sbjct: 392 VSHFNILLTAARKRGIWRWGVRLLNKME 419


>ref|XP_002873660.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297319497|gb|EFH49919.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 674

 Score =  319 bits (818), Expect = 2e-85
 Identities = 151/206 (73%), Positives = 173/206 (83%)
 Frame = +2

Query: 8   IERKGMSPSPVSYSTALAAYRRMEDGNGGLKFFTELRDRYKKGEIGKYDDEDWENEFVKL 187
           ++ KG  P+P++YSTAL  YRRMEDG G L+FF ELR++Y K EIG   D DWE EFVKL
Sbjct: 254 VKEKGFEPNPITYSTALLVYRRMEDGMGALEFFVELREKYSKREIGNDADYDWEFEFVKL 313

Query: 188 EKFTIRICYQVMRRWLVKGDHSSTKVLQLLSEMDKAGLNPGRAEYERLVWACTLEGHHIV 367
           E F  RICYQVMRRWLVK ++ +T+VL+LL+ MD AG  P R E+ERL+WACT E H+IV
Sbjct: 314 ENFIGRICYQVMRRWLVKDENWTTRVLKLLNAMDNAGPKPSREEHERLIWACTREEHYIV 373

Query: 368 AKDLYKRIRERESEISLSVCNHAIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELVVS 547
            K+LYKRIRER  EISLSVCNH IWLMGKAKKWWAALEIYEDLLD+GP+PNNLSYELVVS
Sbjct: 374 GKELYKRIRERFPEISLSVCNHLIWLMGKAKKWWAALEIYEDLLDEGPEPNNLSYELVVS 433

Query: 548 HFNVLLTAASRRGIWRWGVGLLNKME 625
           HFN+LL+AASRRGIWRWGV LLNKME
Sbjct: 434 HFNILLSAASRRGIWRWGVRLLNKME 459


>ref|NP_190245.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206903|sp|Q9SNB7.1|PP264_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g46610 gi|6523064|emb|CAB62331.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332644660|gb|AEE78181.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  318 bits (816), Expect = 4e-85
 Identities = 151/205 (73%), Positives = 173/205 (84%)
 Frame = +2

Query: 11  ERKGMSPSPVSYSTALAAYRRMEDGNGGLKFFTELRDRYKKGEIGKYDDEDWENEFVKLE 190
           + KG  P+P++YSTAL  YRRMEDG G L+FF ELR++Y K EIG     DWE EFVKLE
Sbjct: 246 KEKGFEPNPITYSTALLVYRRMEDGMGALEFFVELREKYAKREIGNDVGYDWEFEFVKLE 305

Query: 191 KFTIRICYQVMRRWLVKGDHSSTKVLQLLSEMDKAGLNPGRAEYERLVWACTLEGHHIVA 370
            F  RICYQVMRRWLVK D+ +T+VL+LL+ MD AG+ P R E+ERL+WACT E H+IV 
Sbjct: 306 NFIGRICYQVMRRWLVKDDNWTTRVLKLLNAMDSAGVRPSREEHERLIWACTREEHYIVG 365

Query: 371 KDLYKRIRERESEISLSVCNHAIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELVVSH 550
           K+LYKRIRER SEISLSVCNH IWLMGKAKKWWAALEIYEDLLD+GP+PNNLSYELVVSH
Sbjct: 366 KELYKRIRERFSEISLSVCNHLIWLMGKAKKWWAALEIYEDLLDEGPEPNNLSYELVVSH 425

Query: 551 FNVLLTAASRRGIWRWGVGLLNKME 625
           FN+LL+AAS+RGIWRWGV LLNKME
Sbjct: 426 FNILLSAASKRGIWRWGVRLLNKME 450