BLASTX nr result

ID: Coptis23_contig00028487 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028487
         (896 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635079.1| PREDICTED: uncharacterized protein LOC100852...    88   3e-15
ref|XP_002524361.1| conserved hypothetical protein [Ricinus comm...    74   4e-11
ref|XP_003549950.1| PREDICTED: uncharacterized protein LOC100781...    72   2e-10

>ref|XP_003635079.1| PREDICTED: uncharacterized protein LOC100852443 [Vitis vinifera]
           gi|297745672|emb|CBI40926.3| unnamed protein product
           [Vitis vinifera]
          Length = 183

 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 59/188 (31%), Positives = 94/188 (50%), Gaps = 6/188 (3%)
 Frame = -1

Query: 797 IMRRGACCGEKAVLVTVFVERPTRRRRVSSNHHPNKIHHPITQAVIR----NXXXXXXXX 630
           + ++   C +KAVLVT++VE+P +R     NHH +  HH +    I+             
Sbjct: 2   VTKKATSCKDKAVLVTLYVEKPRKR----INHHHHHHHHHLLYHTIKGEGFQQNYGADGR 57

Query: 629 GYDRKAELLRYSHCLRESARSTSTTPLHRPAAVASSQVHNQRPTTKIIIVQSKQRQSRAP 450
           GY R+A LL YS  LRESA+S ++  L+ P A++S    +Q+P  KI   QSK +  + P
Sbjct: 58  GYSRRALLLHYSQSLRESAQSAASASLN-PKAISSK---DQQPINKIAAGQSKPKHEKVP 113

Query: 449 TCMGSLKNFIPNFIKSLAG--SYRNEEXXXXXXXXXXXXXXSINTIVKSFQAQKKSGFFS 276
            C+G  K  I + ++S     + +                 +I  ++K+ + QKK GF S
Sbjct: 114 ACLGDWKLSIASLVRSFTSVQAKKTSNKKKKKKKDNGSSRANIAAVMKNLKVQKKLGFIS 173

Query: 275 KLVTSFKK 252
           KL+   +K
Sbjct: 174 KLLKPSQK 181


>ref|XP_002524361.1| conserved hypothetical protein [Ricinus communis]
           gi|223536322|gb|EEF37972.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 192

 Score = 74.3 bits (181), Expect = 4e-11
 Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 16/193 (8%)
 Frame = -1

Query: 776 CGEKAVLVTVFVERPTRRRRVSSNHHPNKIHH--------PITQAVIRN--XXXXXXXXG 627
           C +K V+++V+VE+PT+R+  S +H  +  HH         I Q V  N          G
Sbjct: 12  CKKKVVVISVYVEKPTKRKVTSKSHRHHHHHHHCHYYNHQNIKQEVTANKYGDSINAGKG 71

Query: 626 YDRKAELLRYSHCLRESA-----RSTSTTPLHRPAAVASSQVHNQRPTTKIIIVQSKQRQ 462
           + R+A+LL YS  LRESA      S+   P+ +P    SS V   +PT  I +VQ K + 
Sbjct: 72  FSRRAQLLLYSQRLRESADHRPVESSHLDPIPKP---ISSNV--MQPTENIAVVQRKPKY 126

Query: 461 SRAPTCMGSLKNFIPNFIKSLAG-SYRNEEXXXXXXXXXXXXXXSINTIVKSFQAQKKSG 285
              P C+G  K     F +SL     +N++                N ++ + + QKK G
Sbjct: 127 DNTPACLGKWKISKFKFCRSLTRVQIKNDKKTKHSGSTS-------NAVMNNLKVQKKRG 179

Query: 284 FFSKLVTSFKKRK 246
           F SK +   +KR+
Sbjct: 180 FISKFLAVLQKRR 192


>ref|XP_003549950.1| PREDICTED: uncharacterized protein LOC100781097 [Glycine max]
          Length = 173

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 50/137 (36%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
 Frame = -1

Query: 776 CGEKAVLVTVFVERPTRRRRVSSNHHPNKIH--HPITQAVIRNXXXXXXXXGYDRKAELL 603
           C +KAVLV V+VE+P ++   S  H     H  H I Q V+           Y R+A LL
Sbjct: 9   CNDKAVLVKVYVEKPRKKSSSSIQHQHLHYHIRHTIRQEVVLGSGSKGS---YARRAGLL 65

Query: 602 RYSHCLRESARSTSTTPLHRPAAVASSQVHNQRPTTKIIIVQSKQRQSR-APTCMGSLKN 426
            YSH LRESA+   +TP            +N +P T+I     K+   R  PTC GSLK 
Sbjct: 66  MYSHLLRESAKGALSTPSFSKLVAN----NNLQPPTQITPSNKKKPVYREKPTCFGSLKL 121

Query: 425 FIPNFIKSLAGSYRNEE 375
            IP F++S + +   E+
Sbjct: 122 LIPRFLRSWSKAKNKEK 138


Top