BLASTX nr result

ID: Coptis23_contig00028479 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028479
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24184.3| unnamed protein product [Vitis vinifera]               63   2e-08
ref|XP_002524572.1| hypothetical protein RCOM_1211540 [Ricinus c...    56   3e-06
ref|XP_002321223.1| predicted protein [Populus trichocarpa] gi|2...    55   5e-06

>emb|CBI24184.3| unnamed protein product [Vitis vinifera]
          Length = 1188

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 26/54 (48%), Positives = 40/54 (74%)
 Frame = -3

Query: 264 GNDDFHATSSKRRTPHELEALEDWYSDDRYPSKKAMDDFASSLNLTYKQLRGWF 103
           G  + +  S +R+TP +L+ LE  YS+D YP+++ M D+A++L LTYKQ+RGWF
Sbjct: 13  GTINTNTNSIRRKTPLQLKTLESLYSEDNYPTQRVMKDYAAALGLTYKQVRGWF 66


>ref|XP_002524572.1| hypothetical protein RCOM_1211540 [Ricinus communis]
           gi|223536125|gb|EEF37780.1| hypothetical protein
           RCOM_1211540 [Ricinus communis]
          Length = 1120

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 21/45 (46%), Positives = 37/45 (82%)
 Frame = -3

Query: 234 KRRTPHELEALEDWYSDDRYPSKKAMDDFASSLNLTYKQLRGWFV 100
           KR++P +L+ALE +Y++ +YPS+  M++ A  L+LT+KQ++GWF+
Sbjct: 4   KRKSPLQLQALEKFYAEQKYPSQMVMEELAGVLDLTFKQVQGWFI 48


>ref|XP_002321223.1| predicted protein [Populus trichocarpa] gi|222861996|gb|EEE99538.1|
           predicted protein [Populus trichocarpa]
          Length = 1152

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 24/46 (52%), Positives = 38/46 (82%), Gaps = 1/46 (2%)
 Frame = -3

Query: 234 KRRTPHELEALEDWYS-DDRYPSKKAMDDFASSLNLTYKQLRGWFV 100
           KR++P +L+AL  +Y+ +D+YPS++AM+D A   NLT+KQ+RGWF+
Sbjct: 2   KRKSPLQLQALLKFYAAEDKYPSQRAMEDLAVVSNLTFKQVRGWFI 47


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