BLASTX nr result
ID: Coptis23_contig00028463
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00028463
(558 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACG33855.1| heterogeneous nuclear ribonucleoprotein 27C [Zea ... 94 8e-29
ref|NP_001131827.1| uncharacterized protein LOC100193201 [Zea ma... 94 8e-29
gb|AFW83991.1| hypothetical protein ZEAMMB73_503439 [Zea mays] 94 8e-29
ref|XP_002282572.2| PREDICTED: uncharacterized RNA-binding prote... 91 1e-28
ref|XP_002523592.1| RNA-binding protein, putative [Ricinus commu... 93 6e-28
>gb|ACG33855.1| heterogeneous nuclear ribonucleoprotein 27C [Zea mays]
gi|195644612|gb|ACG41774.1| heterogeneous nuclear
ribonucleoprotein 27C [Zea mays]
Length = 360
Score = 94.0 bits (232), Expect(2) = 8e-29
Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Frame = +3
Query: 9 LGLVTWSSFLKVMWTPCCTHEWEGSTIVIDRVTPKDMDTR-PPSIVSHGRYEAYNSYMTL 185
+G +T+ S V +HE +G+T+V+DR TPKD D R PPS S G Y AYN+Y++
Sbjct: 135 IGFITFQSAESVDNIMQESHELDGTTVVVDRATPKDEDVRYPPSRPSQGGYGAYNAYISA 194
Query: 186 ATRYVALGAPTLYDHPATAYGRVLFEPVRDWAKK 287
ATRY LGAPTLYDHP +AYGR + P + KK
Sbjct: 195 ATRYATLGAPTLYDHPGSAYGRGYYGPSQAVGKK 228
Score = 58.5 bits (140), Expect(2) = 8e-29
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +1
Query: 283 KKIFVGRLSQEASADDIRQYFDRYGRIADVYVPK 384
KKIFVGRL QEA+ DD+RQYF R+GRI D Y+PK
Sbjct: 227 KKIFVGRLPQEANTDDLRQYFGRFGRIVDAYIPK 260
>ref|NP_001131827.1| uncharacterized protein LOC100193201 [Zea mays]
gi|194692652|gb|ACF80410.1| unknown [Zea mays]
gi|194701144|gb|ACF84656.1| unknown [Zea mays]
gi|224032577|gb|ACN35364.1| unknown [Zea mays]
gi|413951337|gb|AFW83986.1| heterogeneous nuclear
ribonucleoprotein 27C isoform 1 [Zea mays]
gi|413951338|gb|AFW83987.1| heterogeneous nuclear
ribonucleoprotein 27C isoform 2 [Zea mays]
gi|413951339|gb|AFW83988.1| heterogeneous nuclear
ribonucleoprotein 27C isoform 3 [Zea mays]
gi|413951340|gb|AFW83989.1| heterogeneous nuclear
ribonucleoprotein 27C isoform 4 [Zea mays]
gi|413951341|gb|AFW83990.1| heterogeneous nuclear
ribonucleoprotein 27C isoform 5 [Zea mays]
Length = 360
Score = 94.0 bits (232), Expect(2) = 8e-29
Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Frame = +3
Query: 9 LGLVTWSSFLKVMWTPCCTHEWEGSTIVIDRVTPKDMDTR-PPSIVSHGRYEAYNSYMTL 185
+G +T+ S V +HE +G+T+V+DR TPKD D R PPS S G Y AYN+Y++
Sbjct: 135 IGFITFQSAESVDNIMQESHELDGTTVVVDRATPKDEDVRYPPSRPSQGGYGAYNAYISA 194
Query: 186 ATRYVALGAPTLYDHPATAYGRVLFEPVRDWAKK 287
ATRY LGAPTLYDHP +AYGR + P + KK
Sbjct: 195 ATRYATLGAPTLYDHPGSAYGRGYYGPSQAVGKK 228
Score = 58.5 bits (140), Expect(2) = 8e-29
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +1
Query: 283 KKIFVGRLSQEASADDIRQYFDRYGRIADVYVPK 384
KKIFVGRL QEA+ DD+RQYF R+GRI D Y+PK
Sbjct: 227 KKIFVGRLPQEANTDDLRQYFGRFGRIVDAYIPK 260
>gb|AFW83991.1| hypothetical protein ZEAMMB73_503439 [Zea mays]
Length = 278
Score = 94.0 bits (232), Expect(2) = 8e-29
Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Frame = +3
Query: 9 LGLVTWSSFLKVMWTPCCTHEWEGSTIVIDRVTPKDMDTR-PPSIVSHGRYEAYNSYMTL 185
+G +T+ S V +HE +G+T+V+DR TPKD D R PPS S G Y AYN+Y++
Sbjct: 53 IGFITFQSAESVDNIMQESHELDGTTVVVDRATPKDEDVRYPPSRPSQGGYGAYNAYISA 112
Query: 186 ATRYVALGAPTLYDHPATAYGRVLFEPVRDWAKK 287
ATRY LGAPTLYDHP +AYGR + P + KK
Sbjct: 113 ATRYATLGAPTLYDHPGSAYGRGYYGPSQAVGKK 146
Score = 58.5 bits (140), Expect(2) = 8e-29
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +1
Query: 283 KKIFVGRLSQEASADDIRQYFDRYGRIADVYVPK 384
KKIFVGRL QEA+ DD+RQYF R+GRI D Y+PK
Sbjct: 145 KKIFVGRLPQEANTDDLRQYFGRFGRIVDAYIPK 178
>ref|XP_002282572.2| PREDICTED: uncharacterized RNA-binding protein C660.15-like isoform
1 [Vitis vinifera] gi|359480890|ref|XP_003632540.1|
PREDICTED: uncharacterized RNA-binding protein
C660.15-like isoform 2 [Vitis vinifera]
gi|296082418|emb|CBI21423.3| unnamed protein product
[Vitis vinifera]
Length = 359
Score = 90.5 bits (223), Expect(2) = 1e-28
Identities = 44/81 (54%), Positives = 55/81 (67%)
Frame = +3
Query: 9 LGLVTWSSFLKVMWTPCCTHEWEGSTIVIDRVTPKDMDTRPPSIVSHGRYEAYNSYMTLA 188
+G +T++S V THE GS +V+DR TPK+ + RP S V G Y AYN+Y+T A
Sbjct: 135 IGFITFASAESVDNLMVETHELGGSAVVVDRATPKEEEFRPVSRVPQGGYGAYNAYITAA 194
Query: 189 TRYVALGAPTLYDHPATAYGR 251
TRY ALGAPTLYDHP + YGR
Sbjct: 195 TRYAALGAPTLYDHPGSVYGR 215
Score = 61.2 bits (147), Expect(2) = 1e-28
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +1
Query: 283 KKIFVGRLSQEASADDIRQYFDRYGRIADVYVPK 384
KKIFVGRL QEASA+D+RQYF R+GRI DVYVPK
Sbjct: 224 KKIFVGRLPQEASAEDLRQYFGRFGRILDVYVPK 257
>ref|XP_002523592.1| RNA-binding protein, putative [Ricinus communis]
gi|223537154|gb|EEF38787.1| RNA-binding protein,
putative [Ricinus communis]
Length = 359
Score = 93.2 bits (230), Expect(2) = 6e-28
Identities = 48/93 (51%), Positives = 60/93 (64%)
Frame = +3
Query: 9 LGLVTWSSFLKVMWTPCCTHEWEGSTIVIDRVTPKDMDTRPPSIVSHGRYEAYNSYMTLA 188
+G +T++S V THE GST+V+DR TPK+ D RP ++HG Y AYN+Y++ A
Sbjct: 135 IGFITFASADSVDSLMADTHELGGSTVVVDRATPKEDDFRPVGRMAHGGYGAYNAYISAA 194
Query: 189 TRYVALGAPTLYDHPATAYGRVLFEPVRDWAKK 287
TRY ALGAPTLYDHP YG EP R KK
Sbjct: 195 TRYAALGAPTLYDHPGPMYG--TGEPARGVGKK 225
Score = 56.2 bits (134), Expect(2) = 6e-28
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +1
Query: 283 KKIFVGRLSQEASADDIRQYFDRYGRIADVYVPK 384
KKIFVGRL QEA+ +D+RQYF R+G I DVYVPK
Sbjct: 224 KKIFVGRLPQEATPEDLRQYFGRFGHILDVYVPK 257