BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028432
         (696 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   154   1e-64
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   147   3e-64
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   147   1e-63
gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indi...   147   1e-63
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   140   4e-62

>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  154 bits (388), Expect(2) = 1e-64
 Identities = 78/129 (60%), Positives = 97/129 (75%), Gaps = 3/129 (2%)
 Frame = -1

Query: 693  KPCSTPVSTDQKLNNVDGDPL--QNVTEYGSLVGALQYHCWTRLDITFSVNQVCQFLHSP 520
            KP STP+ST +KL+  DGD L   + + Y S+VGALQY   TR D++F VN+VCQFLHSP
Sbjct: 688  KPASTPLSTTEKLSIEDGDFLGQNDASHYRSIVGALQYLTLTRSDLSFLVNKVCQFLHSP 747

Query: 519  RTIHLAAVKRIIRYLKGTIDHGLKFTKG-SPAITAFCDADWAGCPIDRRSTNGFIIFSGT 343
             T+H +AVKRI+RY+KGT++ GL+F K  S  I+AF DADWAGC  DRRST GF +F G 
Sbjct: 748  TTVHWSAVKRILRYIKGTVEFGLRFGKSDSMLISAFSDADWAGCSDDRRSTGGFAVFLGP 807

Query: 342  NPISWSAKK 316
            N ISWSA+K
Sbjct: 808  NLISWSARK 816



 Score =  119 bits (297), Expect(2) = 1e-64
 Identities = 58/103 (56%), Positives = 74/103 (71%)
 Frame = -2

Query: 320  KKQNTVSRSSTESEYIALAHTAAELYWLCKILQDLGIPLHTAPILWCDNIRALALASNPV 141
            +KQ TVSRSSTE+EY ALA+   E+ W+ KIL +L I   +   LWCDN+ A  L++NPV
Sbjct: 815  RKQATVSRSSTEAEYKALANATTEVTWVRKILDELRIARPSVAQLWCDNLGATYLSANPV 874

Query: 140  FHARTKHIEVDYHYTRELVTSGTLQLKYICTQDQVADVFTKGL 12
            FHARTKHIE+DYH+ RE V    L +++I T DQ+AD FTK L
Sbjct: 875  FHARTKHIEIDYHFVREQVAKKLLDIQFISTTDQLADGFTKSL 917


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
           gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
           Japonica Group]
          Length = 821

 Score =  147 bits (372), Expect(2) = 3e-64
 Identities = 76/129 (58%), Positives = 96/129 (74%), Gaps = 3/129 (2%)
 Frame = -1

Query: 693 KPCSTPVSTDQKLNNVDGDPL--QNVTEYGSLVGALQYHCWTRLDITFSVNQVCQFLHSP 520
           KP STP+ST +KL+  +G  L  Q+ T+Y S+VGALQY   TR DI+FS+N+VCQFLH+P
Sbjct: 569 KPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAP 628

Query: 519 RTIHLAAVKRIIRYLKGTIDHGLKFTKG-SPAITAFCDADWAGCPIDRRSTNGFIIFSGT 343
            T H AAVKRI+RY+K T+D GLKF +  S  ++ F DADWAG P DRRST GF +F G 
Sbjct: 629 TTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGP 688

Query: 342 NPISWSAKK 316
           N +SWSA+K
Sbjct: 689 NLVSWSARK 697



 Score =  124 bits (310), Expect(2) = 3e-64
 Identities = 59/103 (57%), Positives = 77/103 (74%)
 Frame = -2

Query: 320  KKQNTVSRSSTESEYIALAHTAAELYWLCKILQDLGIPLHTAPILWCDNIRALALASNPV 141
            +KQ TVSRSSTE+EY ALA+  AE+ W+  +LQ+LG+    A  LWCDN+ A  L++NP+
Sbjct: 696  RKQATVSRSSTEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPI 755

Query: 140  FHARTKHIEVDYHYTRELVTSGTLQLKYICTQDQVADVFTKGL 12
            FHARTKHIEVD+H+ RE V    L++ YI T+DQVAD FTK +
Sbjct: 756  FHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAI 798


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  147 bits (372), Expect(2) = 1e-63
 Identities = 76/129 (58%), Positives = 96/129 (74%), Gaps = 3/129 (2%)
 Frame = -1

Query: 693  KPCSTPVSTDQKLNNVDGDPL--QNVTEYGSLVGALQYHCWTRLDITFSVNQVCQFLHSP 520
            KP STP+ST +KL+  +G  L  Q+ T+Y S+VGALQY   TR DI+FS+N+VCQFLH+P
Sbjct: 1147 KPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAP 1206

Query: 519  RTIHLAAVKRIIRYLKGTIDHGLKFTKG-SPAITAFCDADWAGCPIDRRSTNGFIIFSGT 343
             T H AAVKRI+RY+K T+D GLKF +  S  ++ F DADWAG P DRRST GF +F G 
Sbjct: 1207 TTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGP 1266

Query: 342  NPISWSAKK 316
            N +SWSA+K
Sbjct: 1267 NLVSWSARK 1275



 Score =  121 bits (304), Expect(2) = 1e-63
 Identities = 58/103 (56%), Positives = 76/103 (73%)
 Frame = -2

Query: 320  KKQNTVSRSSTESEYIALAHTAAELYWLCKILQDLGIPLHTAPILWCDNIRALALASNPV 141
            +KQ TVSRSS E+EY ALA+  AE+ W+  +LQ+LG+    A  LWCDN+ A  L++NP+
Sbjct: 1274 RKQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPI 1333

Query: 140  FHARTKHIEVDYHYTRELVTSGTLQLKYICTQDQVADVFTKGL 12
            FHARTKHIEVD+H+ RE V    L++ YI T+DQVAD FTK +
Sbjct: 1334 FHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAI 1376


>gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indica Group]
          Length = 391

 Score =  147 bits (372), Expect(2) = 1e-63
 Identities = 76/129 (58%), Positives = 96/129 (74%), Gaps = 3/129 (2%)
 Frame = -1

Query: 693 KPCSTPVSTDQKLNNVDGDPL--QNVTEYGSLVGALQYHCWTRLDITFSVNQVCQFLHSP 520
           KP STP+ST +KL+  +G  L  Q+ T+Y S+VGALQY   TR DI+FS+N+VCQFLH+P
Sbjct: 139 KPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAP 198

Query: 519 RTIHLAAVKRIIRYLKGTIDHGLKFTKG-SPAITAFCDADWAGCPIDRRSTNGFIIFSGT 343
            T H AAVKRI+RY+K T+D GLKF +  S  ++ F DADWAG P DRRST GF +F G 
Sbjct: 199 TTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGP 258

Query: 342 NPISWSAKK 316
           N +SWSA+K
Sbjct: 259 NLVSWSARK 267



 Score =  121 bits (304), Expect(2) = 1e-63
 Identities = 58/103 (56%), Positives = 76/103 (73%)
 Frame = -2

Query: 320 KKQNTVSRSSTESEYIALAHTAAELYWLCKILQDLGIPLHTAPILWCDNIRALALASNPV 141
           +KQ TVSRSS E+EY ALA+  AE+ W+  +LQ+LG+    A  LWCDN+ A  L++NP+
Sbjct: 266 RKQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPI 325

Query: 140 FHARTKHIEVDYHYTRELVTSGTLQLKYICTQDQVADVFTKGL 12
           FHARTKHIEVD+H+ RE V    L++ YI T+DQVAD FTK +
Sbjct: 326 FHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAI 368


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 900

 Score =  140 bits (352), Expect(2) = 4e-62
 Identities = 78/138 (56%), Positives = 95/138 (68%), Gaps = 12/138 (8%)
 Frame = -1

Query: 693  KPCSTPVSTDQKLNNVDGDPL--QNVTEYGSLVGALQYHCWTRLDITFSVNQVCQFLHSP 520
            KP STP+ST +KL+   GD L   +VT+Y S+VGALQY   TR DI++SVN+VCQFL +P
Sbjct: 646  KPVSTPLSTAEKLSVEIGDELGPSDVTQYRSIVGALQYLTLTRPDISYSVNKVCQFLQTP 705

Query: 519  RTIHLAAVKRIIRYLKGTIDHGLKFTKGSP-AITAFCDADWAGCP---------IDRRST 370
             T H +AVKRI+RYLKGT+D GLK  K S   ++AF DADWAG            DRRST
Sbjct: 706  TTAHWSAVKRILRYLKGTLDLGLKIVKSSSNLVSAFSDADWAGSVDDRRSTGGFADRRST 765

Query: 369  NGFIIFSGTNPISWSAKK 316
             GF +F G N ISWSA+K
Sbjct: 766  GGFAVFFGDNLISWSARK 783



 Score =  124 bits (312), Expect(2) = 4e-62
 Identities = 61/104 (58%), Positives = 77/104 (74%)
 Frame = -2

Query: 320  KKQNTVSRSSTESEYIALAHTAAELYWLCKILQDLGIPLHTAPILWCDNIRALALASNPV 141
            +KQ TVSRSSTE+EY ALA+ AAE+ W+ K+L +LGI    A  LWCDN+ A  + +NPV
Sbjct: 782  RKQATVSRSSTEAEYKALANAAAEIIWVRKLLTELGILHPNAARLWCDNLGATYMTANPV 841

Query: 140  FHARTKHIEVDYHYTRELVTSGTLQLKYICTQDQVADVFTKGLS 9
            FHARTKHIEVDYH+ RE V    L + ++ +QDQVAD FTK +S
Sbjct: 842  FHARTKHIEVDYHFVREQVAQKLLDIHFVSSQDQVADGFTKPIS 885