BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028430
         (1279 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   105   1e-40
emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulga...   104   8e-32
gb|EEE61581.1| hypothetical protein OsJ_15963 [Oryza sativa Japo...    97   7e-30
ref|XP_002489257.1| hypothetical protein SORBIDRAFT_0011s003210 ...    78   6e-29
emb|CAN81751.1| hypothetical protein VITISV_026939 [Vitis vinifera]    82   1e-28

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score =  105 bits (263), Expect(2) = 1e-40
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 2/226 (0%)
 Frame = -3

Query: 674 LQRNFKGSNKILKKWNEDVFGHVQVNINKAQSDLLQL*-IRXXXXXXXXXXXXXXXXXXX 498
           LQ   K   ++ + WN  VFG V   +  A  ++ ++  I                    
Sbjct: 279 LQAKLKHMKQVFRHWNRTVFGDVDRKVRMAVEEVNRIQQIIDSVGFSDQLYAQELEAHLI 338

Query: 497 XSNALAIKATMWREKSRANWEDKGEQDTAYFHALYKIRQGKALIVEMEREDNTKLTEQED 318
            + AL  +  +WREK R      G+++TAYFH + K+R  K  I  ++  D   +T+   
Sbjct: 339 LTKALHYQDELWREKLRDQRFIHGDRNTAYFHRISKVRATKNTISFLQDGDAV-ITDPAR 397

Query: 317 IKKHIVDYYNLKFK-HQEIVEDKELVEQIPAKISTEDNEVLTALPGNNEIEFSVFFMDAS 141
           I+ H+++Y+   F      +++  +V+ IP+ +S  DN  L  LP   E++ +VF ++  
Sbjct: 398 IEVHVLNYFQAIFSVDNSCIQNDLVVDTIPSLVSNVDNNSLLRLPLWGEVKNAVFTLNGD 457

Query: 140 SSPGPDGF*GVFYQTCWSIIKEDICRGVRSFFRDSYIPGGINASFI 3
            +PGP+GF G FYQT W I+  D+ + V+ FF    +   IN++ I
Sbjct: 458 GAPGPNGFGGHFYQTYWDIVGADVIQSVQDFFISGQLAQNINSNLI 503



 Score = 88.6 bits (218), Expect(2) = 1e-40
 Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 14/205 (6%)
 Frame = -2

Query: 1275 NIWIIHKIDVTVTVHSISNQQITVLVN----GAMISFAHAHCLTRCRRSLWQEFTAMNN- 1111
            N+W +   +V+  V  IS+Q I + ++       ++  +A      RR LW E T +   
Sbjct: 68   NLWALWGREVSAIVMFISDQCIALEISCHQSTVYVAAVYASTFYLKRRQLWAELTNLQGC 127

Query: 1110 -PSPWMIIGDFNCVLRVEEKKGGRSPLRAAMNEFWDIINTCNMMECHSEGLTLTWCNNQS 934
               PW+ IGDFN VL   EK+  R P   +  +F +  N   +    + G   TW N + 
Sbjct: 128  FQGPWLFIGDFNAVLGAHEKRRRRPPPPLSCIDFMNWSNANLLHHLPTLGAFYTWSNGRL 187

Query: 933  GQRRIYSRLDRAFMNQAWSTKYTGWRYKAESWMG--------SDHAPLIGFNVHIPKPKN 778
            G   +  RLDRA  N+ W      WR  + S +G        SDH PL+         ++
Sbjct: 188  GSDNVALRLDRAICNEEW---VNFWRSSSCSALGNSALVRHQSDHHPLLMSMDFCTSQRS 244

Query: 777  APFRFNEMWTNHDTFLGLVKQSWEK 703
              F+F + WT H+    +V ++W K
Sbjct: 245  GNFKFFKTWTEHEDCRRIVAENWSK 269


>emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1380

 Score =  104 bits (259), Expect(2) = 8e-32
 Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 2/226 (0%)
 Frame = -3

Query: 674 LQRNFKGSNKILKKWNEDVFGHVQVNINKAQSDLLQL*-IRXXXXXXXXXXXXXXXXXXX 498
           L +  K   K LK WNE VFG+++ NI + + ++ QL  I                    
Sbjct: 267 LVQKLKTVKKDLKDWNEKVFGNIEANIKQLEHEINQLDKISNERDLDSFELEKKKKAQVD 326

Query: 497 XSNALAIKATMWREKSRANWEDKGEQDTAYFHALYKIRQGKALIVEMEREDNTKLTEQED 318
             + +  K + W ++SR  W  +G+++T +FH +  IR+ +  I  +E  +  K++E E 
Sbjct: 327 LWSWMKTKESYWSQQSRIKWLKQGDRNTKFFHVVASIRKHRNSITSIE-VNGDKISEPEK 385

Query: 317 IKKHIVDYYNLKFKHQEIVEDKELVEQIPAKISTEDNEVLTALP-GNNEIEFSVFFMDAS 141
           IK   + Y+   FK +    ++ L+E +  K  TE        P  + EI+ +V    + 
Sbjct: 386 IKLEAMKYFRKAFKEESY--NRPLLEGLDFKHLTEAQSADLIAPFSHEEIDKAVASCSSD 443

Query: 140 SSPGPDGF*GVFYQTCWSIIKEDICRGVRSFFRDSYIPGGINASFI 3
            +PGPDGF   F +  W +IKE+I   V+ F+  S +P G N +FI
Sbjct: 444 KAPGPDGFNFTFIKKAWDVIKEEIYETVQEFWNSSRLPKGCNMAFI 489



 Score = 60.5 bits (145), Expect(2) = 8e-32
 Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 2/166 (1%)
 Frame = -2

Query: 1164 CLTRCRRSLWQEFTAMNNPS--PWMIIGDFNCVLRVEEKKGGRSPLRAAMNEFWDIINTC 991
            C    R  +W E       S  P +IIGDFN  L   ++ G  +  ++  N+F   + + 
Sbjct: 114  CSVEERAVVWGEILEFWTTSKLPCLIIGDFNETLASNDR-GSLAISQSGSNDFRQFVQSL 172

Query: 990  NMMECHSEGLTLTWCNNQSGQRRIYSRLDRAFMNQAWSTKYTGWRYKAESWMGSDHAPLI 811
             + E  +     TW    S      S+LDR F+N  W T Y   +    +   SDH PL+
Sbjct: 173  QLTEIPTTE-RFTWFRGNSK-----SKLDRCFVNPEWLTHYPTLKLSLLNRGLSDHCPLL 226

Query: 810  GFNVHIPKPKNAPFRFNEMWTNHDTFLGLVKQSWEKEIISGPLLLV 673
              N  +      PF+F   W +    + LVK +W+K   S P+ LV
Sbjct: 227  -LNSSVRNWGPKPFKFQNCWLSDPRCMRLVKDTWQK---SSPMGLV 268


>gb|EEE61581.1| hypothetical protein OsJ_15963 [Oryza sativa Japonica Group]
          Length = 1494

 Score = 97.4 bits (241), Expect(2) = 7e-30
 Identities = 56/213 (26%), Positives = 102/213 (47%)
 Frame = -3

Query: 641  LKKWNEDVFGHVQVNINKAQSDLLQL*IRXXXXXXXXXXXXXXXXXXXXSNALAIKATMW 462
            LK+W+ D  G+++ +I + + +L ++ +R                       L  +   W
Sbjct: 533  LKRWSRDKIGNIKKSIERCRRELEEMRMRGREDSEPDVHRLKIFLQ----ELLHREEIWW 588

Query: 461  REKSRANWEDKGEQDTAYFHALYKIRQGKALIVEMEREDNTKLTEQEDIKKHIVDYYNLK 282
            +++SR  W  +G+++T YFH     R  K LI ++ R D    +++E++ +    ++   
Sbjct: 589  KQRSRITWLKEGDRNTRYFHLKASWRARKNLIKKLRRSDGMMCSKEEELGEIARSFFRDL 648

Query: 281  FKHQEIVEDKELVEQIPAKISTEDNEVLTALPGNNEIEFSVFFMDASSSPGPDGF*GVFY 102
            +   E +   EL+     KI+ E N +LT    + EI  ++F +    +PGPDGF   F+
Sbjct: 649  YTKDESLNPGELLNMFEPKITDEMNGMLTKPFTDEEISDALFQIGPLKAPGPDGFPARFF 708

Query: 101  QTCWSIIKEDICRGVRSFFRDSYIPGGINASFI 3
            Q  W ++K D+  GVR FF       G+N + I
Sbjct: 709  QRNWGVLKRDVIEGVREFFETGEWKEGMNDTVI 741



 Score = 60.8 bits (146), Expect(2) = 7e-30
 Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 5/164 (3%)
 Frame = -2

Query: 1182 SFAHAHCLTRCRRSLWQEFTA--MNNPSPWMIIGDFNCVLRVEEKKGGRSPLRAAMNEFW 1009
            +F +     + R  +W       +N   PW++IGDFN  +   E +         M +F 
Sbjct: 349  TFVYGEPKAQNRHEMWNLLRRIRLNASDPWLMIGDFNEAMWQIEHRSRVKHSERQMRDFR 408

Query: 1008 DIINTCNMMECHSEGLTLTWCNNQSGQRRIYSRLDRAFMNQAWSTKYTGWRYKAESWMGS 829
            +++  C++ +   +G+  T+ NNQ+    +  RLDRA  +  W   +        +   S
Sbjct: 409  EVLVECDLQDIGFQGVPWTYDNNQASPNNVKVRLDRAVASPVWRAMFDQANIMHLTTACS 468

Query: 828  DHAPLI---GFNVHIPKPKNAPFRFNEMWTNHDTFLGLVKQSWE 706
            DH PL+   G N+   + ++    F  +W    +F  +  +SW+
Sbjct: 469  DHVPLLLEKGGNMQ-QRRRSKINCFEAVWERVKSFNSIEHESWD 511


>ref|XP_002489257.1| hypothetical protein SORBIDRAFT_0011s003210 [Sorghum bicolor]
           gi|241947006|gb|EES20151.1| hypothetical protein
           SORBIDRAFT_0011s003210 [Sorghum bicolor]
          Length = 821

 Score = 77.8 bits (190), Expect(2) = 6e-29
 Identities = 51/193 (26%), Positives = 88/193 (45%)
 Frame = -3

Query: 638 KKWNEDVFGHVQVNINKAQSDLLQL*IRXXXXXXXXXXXXXXXXXXXXSNALAIKATMWR 459
           K W+ D+FG V   + + ++ L +                        +  LA +  M +
Sbjct: 369 KSWDRDIFGSVTKKVKELRAKLEE---ERRHTLYRGPTDRERSIMAQLTEVLAREEVMAK 425

Query: 458 EKSRANWEDKGEQDTAYFHALYKIRQGKALIVEMEREDNTKLTEQEDIKKHIVDYYNLKF 279
           ++SR  W  +G++ T +F A  K R     I  +   D    T+QED+++   D+Y   F
Sbjct: 426 QRSRITWLREGDRKTEFFQAKAKPRSKTNRIKLLMDVDGHVFTDQEDLERLTGDFYQRLF 485

Query: 278 KHQEIVEDKELVEQIPAKISTEDNEVLTALPGNNEIEFSVFFMDASSSPGPDGF*GVFYQ 99
             Q+ +    + + +P K++    E+L A     E+E ++F M  + +PG DGF   F+Q
Sbjct: 486 SAQDELLPDLVCKHVPRKVTPVMCELLGAPFSEQEVEEALFCMAPNKAPGVDGFNAGFFQ 545

Query: 98  TCWSIIKEDICRG 60
           T W +IK  I  G
Sbjct: 546 THWDLIKGAILHG 558



 Score = 77.4 bits (189), Expect(2) = 6e-29
 Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 9/169 (5%)
 Frame = -2

Query: 1149 RRSLWQ--EFTAMNNPSPWMIIGDFNCVLRVEEKKGGRSPLRAAMNEFWDIINTCNMMEC 976
            RR  W    F    +  PW+ +GDFN VL +EE+ G        +  F D++N C + + 
Sbjct: 191  RRESWYLLRFLRAQSSDPWLCLGDFNEVLAMEEQMGANEREMWQVTAFQDVVNDCALTDL 250

Query: 975  HSEGLTLTWCNNQSGQRRIYSRLDRAFMNQAWSTKYTGWRYKAESWMGSDHAPLIGFNVH 796
               GL  TW N Q G R +  RLDRA  +  +     G          SDHA L+   V 
Sbjct: 251  GFHGLPYTWDNRQEGGRNVKVRLDRALGDNKFMELLGGSEVFHLPTTESDHAGLL-VEVR 309

Query: 795  IPKP-------KNAPFRFNEMWTNHDTFLGLVKQSWEKEIISGPLLLVA 670
              +P       ++ PFR+  MW     +   V ++W+    S  L  VA
Sbjct: 310  HQEPGAQTRRRRHKPFRYENMWKTRGDYHEFVNRTWDPGPGSANLSTVA 358


>emb|CAN81751.1| hypothetical protein VITISV_026939 [Vitis vinifera]
          Length = 1653

 Score = 82.4 bits (202), Expect(2) = 1e-28
 Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 3/216 (1%)
 Frame = -3

Query: 641  LKKWNEDVFGHVQVNINKAQSDLLQL*-IRXXXXXXXXXXXXXXXXXXXXSNALAIKATM 465
            +K WN +VFG V+VN N A   L     +                        + ++   
Sbjct: 900  IKVWNREVFGRVEVNKNSALQQLEHWDGVESERRLSMAEAEQKKEAKDAFYKWVLMEEIQ 959

Query: 464  WREKSRANWEDKGEQDTAYFHALYKI-RQGKALIVEMEREDNTKLTEQEDIKKHIVD-YY 291
            WR+KSR  W  +G+++T YFH +    R+  +L  +    +   LTE +++++ IV+ + 
Sbjct: 960  WRQKSRELWLKEGDRNTGYFHRMANAHRRNNSL--DRITINGEMLTEDQEVREGIVNAFQ 1017

Query: 290  NLKFKHQEIVEDKELVEQIPAKISTEDNEVLTALPGNNEIEFSVFFMDASSSPGPDGF*G 111
            NL  +      D E ++    ++++ + E L       EI F++  M    +PGPDGF  
Sbjct: 1018 NLLSEEPGWRADIEGLQL--KQLNSREAENLEVPFSEEEIHFALMEMRGDKAPGPDGFTM 1075

Query: 110  VFYQTCWSIIKEDICRGVRSFFRDSYIPGGINASFI 3
             F+Q CW ++KE++    + FF        +N +F+
Sbjct: 1076 AFWQDCWDVVKEEVMELFKEFFXYGSFAKSLNTTFL 1111



 Score = 71.6 bits (174), Expect(2) = 1e-28
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 3/189 (1%)
 Frame = -2

Query: 1263 IHKIDVTVTVHSISNQQITVLVNGAMISFAHAHCLTRCRRSLWQEFTAMNN--PSPWMII 1090
            + K  V+  + ++ N  I +          +       R  LW+E  A+      PW I 
Sbjct: 700  VGKFSVSCRIRNVENGMIWIFTG------VYGPFTKEDRDCLWEELGAIRGLWEEPWCIG 753

Query: 1089 GDFNCVLRVEEK-KGGRSPLRAAMNEFWDIINTCNMMECHSEGLTLTWCNNQSGQRRIYS 913
            GDFN +L   E+ + GR  L  AM  F   ++   +++   +G   TW   ++ Q   ++
Sbjct: 754  GDFNVILSQRERSRQGR--LSGAMRNFAQTVDDLELIDLPMQGGIATWSGGRNNQS--WA 809

Query: 912  RLDRAFMNQAWSTKYTGWRYKAESWMGSDHAPLIGFNVHIPKPKNAPFRFNEMWTNHDTF 733
            RLDR  + Q W   ++G          SDH P++     + +    PFRF  MW   D F
Sbjct: 810  RLDRFLVTQQWLDMFSGVAQCRMHRPTSDHFPILLMGGGLRRGPT-PFRFENMWLKMDDF 868

Query: 732  LGLVKQSWE 706
             GL++  W+
Sbjct: 869  KGLLRGWWQ 877