BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028424
         (398 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37517.3| unnamed protein product [Vitis vinifera]              187   1e-45
ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis ...   187   1e-45
ref|XP_003602652.1| DNA topoisomerase [Medicago truncatula] gi|3...   185   3e-45
ref|XP_002527391.1| prokaryotic DNA topoisomerase, putative [Ric...   182   2e-44
ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha [Glycin...   179   3e-43

>emb|CBI37517.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  187 bits (474), Expect = 1e-45
 Identities = 86/132 (65%), Positives = 105/132 (79%)
 Frame = +3

Query: 3   RCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTTQACNSCTPRSPGP 182
           +C +C   DMVL++KPDGNFMVGCLGYPQCRNVVWLPGSISEA +TT +CN CT   PGP
Sbjct: 308 QCTLCQESDMVLRRKPDGNFMVGCLGYPQCRNVVWLPGSISEAAITTISCNHCT---PGP 364

Query: 183 IFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICGTRSRNPSVPVSSDRGRGPRA 362
           ++ IQFKFR+LEIPP YN++HLGC+ GCDE L++L +ICGT SR       S RGRG  A
Sbjct: 365 VYKIQFKFRRLEIPPNYNIDHLGCVCGCDEILRQLTEICGTGSR------ISARGRGSNA 418

Query: 363 SASNGQQTNTRQ 398
           S++N Q++NTRQ
Sbjct: 419 SSTNAQRSNTRQ 430


>ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera]
          Length = 914

 Score =  187 bits (474), Expect = 1e-45
 Identities = 86/132 (65%), Positives = 105/132 (79%)
 Frame = +3

Query: 3    RCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTTQACNSCTPRSPGP 182
            +C +C   DMVL++KPDGNFMVGCLGYPQCRNVVWLPGSISEA +TT +CN CT   PGP
Sbjct: 633  QCTLCQESDMVLRRKPDGNFMVGCLGYPQCRNVVWLPGSISEAAITTISCNHCT---PGP 689

Query: 183  IFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICGTRSRNPSVPVSSDRGRGPRA 362
            ++ IQFKFR+LEIPP YN++HLGC+ GCDE L++L +ICGT SR       S RGRG  A
Sbjct: 690  VYKIQFKFRRLEIPPNYNIDHLGCVCGCDEILRQLTEICGTGSR------ISARGRGSNA 743

Query: 363  SASNGQQTNTRQ 398
            S++N Q++NTRQ
Sbjct: 744  SSTNAQRSNTRQ 755


>ref|XP_003602652.1| DNA topoisomerase [Medicago truncatula] gi|355491700|gb|AES72903.1|
           DNA topoisomerase [Medicago truncatula]
          Length = 432

 Score =  185 bits (470), Expect = 3e-45
 Identities = 89/131 (67%), Positives = 99/131 (75%)
 Frame = +3

Query: 3   RCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTTQACNSCTPRSPGP 182
           RC +C   DMVLKK  DGNFMVGC  YPQCR+VVWLPGSISEA VTT ACN+CT   PGP
Sbjct: 114 RCRLCQESDMVLKKNRDGNFMVGCRSYPQCRSVVWLPGSISEAVVTTNACNNCT---PGP 170

Query: 183 IFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICGTRSRNPSVPVSSDRGRGPRA 362
           ++ IQFKF+QL+IPP YNVNHLGCIGGCDE L +L +ICGT SR P+      RGRGP A
Sbjct: 171 VYLIQFKFQQLKIPPSYNVNHLGCIGGCDEILTQLTEICGTGSRMPA------RGRGPTA 224

Query: 363 SASNGQQTNTR 395
           S SN   TN R
Sbjct: 225 STSNVHHTNPR 235


>ref|XP_002527391.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
            gi|223533243|gb|EEF34998.1| prokaryotic DNA
            topoisomerase, putative [Ricinus communis]
          Length = 833

 Score =  182 bits (462), Expect = 2e-44
 Identities = 83/131 (63%), Positives = 100/131 (76%)
 Frame = +3

Query: 3    RCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTTQACNSCTPRSPGP 182
            +CG+C   +MVL++  DGNFMVGC+GYPQCRN +WLPG I EATVTT  CN CT   PGP
Sbjct: 636  QCGLCRETNMVLRRNRDGNFMVGCMGYPQCRNAIWLPGPIIEATVTTSVCNYCT---PGP 692

Query: 183  IFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICGTRSRNPSVPVSSDRGRGPRA 362
            ++ IQFKFRQLEIPPG++VNHLGCIGGCD+TL++L DICGT SR  +      R R P  
Sbjct: 693  VYLIQFKFRQLEIPPGFSVNHLGCIGGCDDTLRQLTDICGTGSRVQA------RARAPNT 746

Query: 363  SASNGQQTNTR 395
            + SN QQ+NTR
Sbjct: 747  TPSNSQQSNTR 757


>ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha [Glycine max]
          Length = 913

 Score =  179 bits (453), Expect = 3e-43
 Identities = 84/132 (63%), Positives = 96/132 (72%)
 Frame = +3

Query: 3    RCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTTQACNSCTPRSPGP 182
            RCG+C   DM+L+K  DGNFMVGC+GYPQCRN VWLPGS+SEA VTT  CN CT   PGP
Sbjct: 638  RCGLCQESDMLLRKNRDGNFMVGCMGYPQCRNAVWLPGSVSEAVVTTNTCNFCT---PGP 694

Query: 183  IFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICGTRSRNPSVPVSSDRGRGPRA 362
            ++ IQFKFR+LEIPP Y+ NHLGCIGGCDE L +L +ICG   R P +P    R RGP A
Sbjct: 695  VYLIQFKFRRLEIPPNYSPNHLGCIGGCDEILAQLTEICG---RGPRMPA---RPRGPTA 748

Query: 363  SASNGQQTNTRQ 398
              SN   TN RQ
Sbjct: 749  PTSNAHHTNPRQ 760